aboutsummaryrefslogtreecommitdiff
path: root/story-boards
diff options
context:
space:
mode:
authorPjotr Prins2021-11-16 06:35:21 -0600
committerPjotr Prins2021-11-16 06:35:21 -0600
commit4728b25cb9df1a6c2b88830d0590f434ddb32c86 (patch)
treebf4bccf6f3843e4cb7f42103dffaf1d16afcf9e3 /story-boards
parent24bef7c939fe6bf454c35171a83bd1a74a6ce62f (diff)
downloadgn-docs-4728b25cb9df1a6c2b88830d0590f434ddb32c86.tar.gz
Add ToC
Diffstat (limited to 'story-boards')
-rw-r--r--story-boards/starting-from-known-gene/starting-from-known-gene.md14
1 files changed, 10 insertions, 4 deletions
diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md
index 2370521..e254a03 100644
--- a/story-boards/starting-from-known-gene/starting-from-known-gene.md
+++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md
@@ -2,7 +2,13 @@
GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2).
-## Use the search page
+# Table of contents
+1. [Global search](#gsearch)
+1. [Gene aliases](#alias)
+1. [Genewiki](#genewiki)
+1. [TODO](#TODO)
+
+## Use the search page <a name="gsearch" />
The top bar of GeneNetwork shows a global search. We can look for the `Brca2` mouse gene:
@@ -11,7 +17,7 @@ The top bar of GeneNetwork shows a global search. We can look for the `Brca2` mo
</p>
-## Find the right alias/name
+## Find the right alias/name <a name="alias" />
GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P),
you get to the 'trait page' which shows the aliases:
@@ -22,11 +28,11 @@ you get to the 'trait page' which shows the aliases:
GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738).
-## Find the GeneNetwork genewiki entry
+## Find the GeneNetwork genewiki entry <a name="genewiki" />
GeneNetwork maintains info on gene entries. For example for [BRCA2](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2).
-## TODO
+## TODO <a name="TODO" />
* [ ] expand story line
* [ ] global search is faulty, see gn-gemtext-threads/issues/genenetwork/global-search.gmi