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authorPjotr Prins2021-01-13 10:14:44 +0000
committerPjotr Prins2021-01-13 10:50:51 +0000
commitaac4e615167c65889445b50db9ae7ae903446347 (patch)
treedccb099e96858cc028a826939f9a037a25b28cd1
parentebb8f80fef22ef495f151475b6b47159713fcfbc (diff)
downloadgn-docs-aac4e615167c65889445b50db9ae7ae903446347.tar.gz
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@@ -23,6 +23,9 @@ services that run in isolated containers. Effectively, we have three
outward facing servers that are fully used by the GeneNetwork team
with a total of 64+64+40+28 = 196 real cores.
+## Octopus HPC cluster
+
+
Late 2020 we added a small HPC cluster (Octopus), consisting of 11
PowerEdge R6515 AMD EPYC 7402P 24-core CPUs (264 real cores). Nine of
these machines are equipped with 128 GB RAM and two nodes have 1 TB of
@@ -33,6 +36,10 @@ file storage and we run the common workflow language (CWL) and Docker
containers. The racks have dedicated high-speed Cisco switches and
firewalls that are maintained by UTHSC IT staff.
+![Octopus HPC](./octopus.jpg)
+
+## Specials
+
We also run some 'specials' including an ARM-based NVIDIA Jetson and a
RISC-V [PolarFire
SOC](https://www.cnx-software.com/2020/07/20/polarfire-soc-icicle-64-bit-risc-v-and-fpga-development-board-runs-linux-or-freebsd/). We
@@ -40,6 +47,8 @@ have also ordered two RISC-V
[SiFive](https://www.sifive.com/blog/the-heart-of-risc-v-development-is-unmatched)
computers.
+## ISAAC access
+
In addition to above hardware the GeneNetwork team also has batch
submission access to the HIPAA complient cluster computing resource at
the ISAAX computing facility operated by the UT Joint Institute for
@@ -57,6 +66,8 @@ services because of stringent security requirements. ISAAC however,
can be highly useful for precomputed genomics and genetics results
using standardized pipelines.
+## Deployment
+
The software stack is maintained and deployed throughout with GNU
Guix, a modern software package manager. All current tools are
maintained on
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