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| author | Pjotr Prins | 2021-11-16 05:56:34 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2021-11-16 05:56:34 -0600 |
| commit | 879b2c6e7a62680de28cc1efb968d7c343811114 (patch) | |
| tree | 8143b7b7ff1acad7ad8d41f191d03303bd33ef90 | |
| parent | afd6d97201557b3878ada86d9c00b514841cbcee (diff) | |
| download | gn-docs-879b2c6e7a62680de28cc1efb968d7c343811114.tar.gz | |
Story board
| -rw-r--r-- | story-boards/global-search-gene.png | bin | 0 -> 47303 bytes | |||
| -rw-r--r-- | story-boards/starting-from-known-gene.md | 19 |
2 files changed, 17 insertions, 2 deletions
diff --git a/story-boards/global-search-gene.png b/story-boards/global-search-gene.png Binary files differnew file mode 100644 index 0000000..730e13e --- /dev/null +++ b/story-boards/global-search-gene.png diff --git a/story-boards/starting-from-known-gene.md b/story-boards/starting-from-known-gene.md index fecd76a..044e762 100644 --- a/story-boards/starting-from-known-gene.md +++ b/story-boards/starting-from-known-gene.md @@ -1,8 +1,17 @@ # Storyboard: starting from a known gene -GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Let us start with `BRCA2`. +GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2). -## Find the right name +## Use the search page + +The top bar of GeneNetwork shows a global search. We can look for the `Brca2` mouse gene: + +<p align="center"> + <img src="global-search-gene.png" alt="Global gene search"/> +</p> + + +## Find the right alias/name GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P), you get to the 'trait page' which shows the aliases: @@ -10,3 +19,9 @@ you get to the 'trait page' which shows the aliases: <p align="center"> <img src="gene-aliases.png" alt="Gene aliases"/> </p> + +GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738). + +## Find the GeneNetwork genewiki entry + +TBD |
