generate screen shots

6 files changed, 14 insertions, 20 deletions

diff --git a/story-boards/starting-from-known-gene/gene-aliases.png b/story-boards/starting-from-known-gene/gene-aliases.png
index 902723c..a5c544d 100644
--- a/story-boards/starting-from-known-gene/gene-aliases.png
+++ b/story-boards/starting-from-known-gene/gene-aliases.png
diff --git a/story-boards/starting-from-known-gene/genenetwork.png b/story-boards/starting-from-known-gene/genenetwork-home.png
index 06c16f3..06c16f3 100644
--- a/story-boards/starting-from-known-gene/genenetwork.png
+++ b/story-boards/starting-from-known-gene/genenetwork-home.png
diff --git a/story-boards/starting-from-known-gene/generate.sh b/story-boards/starting-from-known-gene/generate.sh
index 30d5279..d309ef8 100755
--- a/story-boards/starting-from-known-gene/generate.sh
+++ b/story-boards/starting-from-known-gene/generate.sh
@@ -1,3 +1,8 @@
 #!/bin/bash
 
-ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/" --out genenetwork.png
+ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/" --out genenetwork-home.png
+convert -extract 800x100+0+0 genenetwork-home.png global-search.png
+
+ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/gsearch?type=gene&terms=Brca2" --out global-search-gene.png --extract 800x300+0+0
+
+ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P"  --out gene-aliases.png --extract 800x800+0+0
diff --git a/story-boards/starting-from-known-gene/global-search-gene.png b/story-boards/starting-from-known-gene/global-search-gene.png
index 730e13e..f7f477b 100644
--- a/story-boards/starting-from-known-gene/global-search-gene.png
+++ b/story-boards/starting-from-known-gene/global-search-gene.png
diff --git a/story-boards/starting-from-known-gene/global-search.png b/story-boards/starting-from-known-gene/global-search.png
new file mode 100644
index 0000000..b2cf1ef
--- /dev/null
+++ b/story-boards/starting-from-known-gene/global-search.png
diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md
index 38de598..3eaaafd 100644
--- a/story-boards/starting-from-known-gene/starting-from-known-gene.md
+++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md
@@ -2,41 +2,30 @@
 
 GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2).
 
-# Table of contents
-1. [Global search](#gsearch)
-1. [Gene aliases](#alias)
-1. [Genewiki](#genewiki)
-1. [TODO](#TODO)
+## Use the search page
 
-## Use the search page <a name="gsearch" />
+The top bar of GeneNetwork shows a global search:
 
-The top bar of GeneNetwork shows a global search.
+[![Home page](./global-search.png "Global search")](https://genenetwork.org/)
 
-![Home page](./genenetwork.png "The GeneNetwork HOME")
-
-We can look for the `Brca2` mouse gene:
-
-<p align="center">
-  <img src="global-search-gene.png" alt="Global gene search"/>
-</p>
+We can look for the `Brca2` mouse gene, resulting in
 
+[![Global search](./global-search-gene.png "Global search gene")]()
 
 ## Find the right alias/name <a name="alias" />
 
 GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P),
 you get to the 'trait page' which shows the aliases:
 
-<p align="center">
-  <img src="gene-aliases.png" alt="Gene aliases"/>
-</p>
+[![Gene aliases](./gene-aliases.png "Gene aliase")](https://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P)
 
 GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example,  [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738).
 
-## Find the GeneNetwork genewiki entry <a name="genewiki" />
+## Find the GeneNetwork genewiki entry
 
 GeneNetwork maintains info on gene entries. For example for [BRCA2](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2).
 
-## TODO <a name="TODO" />
+## TODO
 
 * [ ] expand story line
 * [ ] global search is faulty, see gn-gemtext-threads/issues/genenetwork/global-search.gmi