Index

In this section we describe GN features:

Introduction

Topics

1. Data structures
2. Search for genes, QTL, SNPs, etc.
3. Available datasets and annotation
4. Selecting and filtering data
5. Online genome, variant, SNP browsers
6. Mapping QTL and GWAS
7. Statistical overviews and heatmaps
8. About mapping and population stratification—Using LMMs
9. Correlations and scatterplots—the first steps toward networks
10. Partial correlations—a simple type of causal modeling
11. Graphs and moving toward acyclic causal models—from Swell Wright to Judea Pearl
12. Phenome-wide association mapping: Getting at pleiotropy
13. Bayesian Network Webserver in GN
14. Collections and sharing
15. Multifamily and multispecies data comparison and integration
16. Connecting other services, such as Webgestalt, GeneWeaver
17. Upload, review and edit data
18. Experimental design and power calculations
19. Community, materials and documentation
20. Free software and deployment

Discussion

1. Future work