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"""Fixtures and utilities for group-related tests"""
import uuid
import pytest
from gn_auth.auth.db import sqlite3 as db
from gn_auth.auth.authorisation.resources.groups import Group
from gn_auth.auth.authorisation.resources import Resource, ResourceCategory
from .role_fixtures import RESOURCE_EDITOR_ROLE
TEST_GROUP_01 = Group(uuid.UUID("9988c21d-f02f-4d45-8966-22c968ac2fbf"),
"TheTestGroup", {})
TEST_GROUP_02 = Group(uuid.UUID("e37d59d7-c05e-4d67-b479-81e627d8d634"),
"AnotherTestGroup", {})
TEST_GROUPS = (TEST_GROUP_01, TEST_GROUP_02)
SYSTEM_CATEGORY = ResourceCategory(
uuid.UUID("aa3d787f-af6a-44fa-9b0b-c82d40e54ad2"),
"system",
"The overall system.")
SYSTEM_RESOURCE = Resource(
uuid.UUID("0248b289-b277-4eaa-8c94-88a434d14b6e"),
"GeneNetwork System",
SYSTEM_CATEGORY,
True)
GROUP_CATEGORY = ResourceCategory(
uuid.UUID("1e0f70ee-add5-4358-8c6c-43de77fa4cce"),
"group",
"A group resource.")
GROUPS_AS_RESOURCES = tuple({
"group_id": str(group.group_id),
"resource_id": res_id,
"resource_name": group.group_name,
"category_id": str(GROUP_CATEGORY.resource_category_id),
"public": "0"
} for res_id, group in zip(
("38d1807d-105f-44a7-8327-7e2d973b6d8d",
"89458ef6-e090-4b53-8c2c-59eaf2785f11"),
TEST_GROUPS))
GROUP_RESOURCES = tuple(
Resource(uuid.UUID(row["resource_id"]),
row["resource_name"],
GROUP_CATEGORY,
False)
for row in GROUPS_AS_RESOURCES)
TEST_RESOURCES_GROUP_01 = (
Resource(uuid.UUID("26ad1668-29f5-439d-b905-84d551f85955"),
"ResourceG01R01",
ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
"genotype", "Genotype Dataset"),
True),
Resource(uuid.UUID("2130aec0-fefd-434d-92fd-9ca342348b2d"),
"ResourceG01R02",
ResourceCategory(uuid.UUID("548d684b-d4d1-46fb-a6d3-51a56b7da1b3"),
"phenotype", "Phenotype (Publish) Dataset"),
False),
Resource(uuid.UUID("e9a1184a-e8b4-49fb-b713-8d9cbeea5b83"),
"ResourceG01R03",
ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
"mrna", "mRNA Dataset"),
False))
TEST_RESOURCES_GROUP_02 = (
Resource(uuid.UUID("14496a1c-c234-49a2-978c-8859ea274054"),
"ResourceG02R01",
ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
"genotype", "Genotype Dataset"),
False),
Resource(uuid.UUID("04ad9e09-94ea-4390-8a02-11f92999806b"),
"ResourceG02R02",
ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
"mrna", "mRNA Dataset"),
True))
TEST_RESOURCES = TEST_RESOURCES_GROUP_01 + TEST_RESOURCES_GROUP_02
TEST_RESOURCES_PUBLIC = (
SYSTEM_RESOURCE, TEST_RESOURCES_GROUP_01[0], TEST_RESOURCES_GROUP_02[1])
def __gtuple__(cursor):
return tuple(dict(row) for row in cursor.fetchall())
@pytest.fixture(scope="function")
def fxtr_group(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name]
"""Fixture: setup a test group."""
with db.cursor(conn_after_auth_migrations) as cursor:
cursor.executemany(
"INSERT INTO groups(group_id, group_name) VALUES (?, ?)",
tuple(
(str(group.group_id), group.group_name)
for group in TEST_GROUPS))
cursor.executemany(
"INSERT INTO resources "
"VALUES(:resource_id, :resource_name, :category_id, :public)",
GROUPS_AS_RESOURCES)
cursor.executemany(
"INSERT INTO group_resources(resource_id, group_id) "
"VALUES(:resource_id, :group_id)",
GROUPS_AS_RESOURCES)
yield (conn_after_auth_migrations, TEST_GROUPS[0])
with db.cursor(conn_after_auth_migrations) as cursor:
resource_id_params = tuple(
(str(res["resource_id"]),) for res in GROUPS_AS_RESOURCES)
cursor.executemany("DELETE FROM group_resources WHERE resource_id=?",
resource_id_params)
cursor.executemany("DELETE FROM resources WHERE resource_id=?",
resource_id_params)
cursor.executemany(
"DELETE FROM groups WHERE group_id=?",
((str(group.group_id),) for group in TEST_GROUPS))
@pytest.fixture(scope="function")
def fxtr_users_in_group(fxtr_group, fxtr_users):# pylint: disable=[redefined-outer-name, unused-argument]
"""Link the users to the groups."""
conn, all_users = fxtr_users
users = tuple(
user for user in all_users if user.email not in ("unaff@iliated.user",))
query_params = tuple(
(str(TEST_GROUP_01.group_id), str(user.user_id)) for user in users)
with db.cursor(conn) as cursor:
cursor.executemany(
"INSERT INTO group_users(group_id, user_id) VALUES (?, ?)",
query_params)
yield (conn, TEST_GROUP_01, users)
with db.cursor(conn) as cursor:
cursor.executemany(
"DELETE FROM group_users WHERE group_id=? AND user_id=?",
query_params)
@pytest.fixture(scope="function")
def fxtr_group_user_roles(fxtr_users_in_group, fxtr_resources, fxtr_resource_roles):#pylint: disable=[redefined-outer-name,unused-argument]
"""Assign roles to users."""
_conn, _group, group_users = fxtr_users_in_group
_conn, group_resources = fxtr_resources
conn, _groups, resource_roles = fxtr_resource_roles
users = tuple(user for user in group_users if user.email
not in ("unaff@iliated.user", "group@lead.er"))
users_roles_resources = (
(user, RESOURCE_EDITOR_ROLE, TEST_RESOURCES_GROUP_01[1])
for user in users if user.email == "group@mem.ber01")
with db.cursor(conn) as cursor:
params = tuple({
"user_id": str(user.user_id),
"role_id": str(role.role_id),
"resource_id": str(resource.resource_id)
} for user, role, resource in users_roles_resources)
cursor.executemany(
("INSERT INTO user_roles "
"VALUES (:user_id, :role_id, :resource_id)"),
params)
yield conn, group_users, resource_roles, group_resources
with db.cursor(conn) as cursor:
cursor.executemany(
("DELETE FROM user_roles WHERE "
"user_id=:user_id AND role_id=:role_id AND "
"resource_id=:resource_id"),
params)
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