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AgeCommit message (Collapse)Author
10 daysDecouple gn-auth from production (https://genenetwork.org).Frederick Muriuki Muriithi
Copy over files from GN2 for a quick decoupling of gn-auth from the production system.
11 daysImplement initial views into the groups endpoints.Frederick Muriuki Muriithi
11 daysBugfix: Handle possible missing json data.Frederick Muriuki Muriithi
2025-07-09Improve error handling and reporting.Frederick Muriuki Muriithi
- Refactor out common functionality into reusable utilities - Handle errors from the Authlib library/package - Handle 4xx errors generically.
2025-07-09Setup independent logging for packages.Frederick Muriuki Muriithi
2025-07-09Move error handling into separate package.Frederick Muriuki Muriithi
2025-07-09Fix some linting issues.Frederick Muriuki Muriithi
2025-07-08Provide zero counts for all and filtered totals.Frederick Muriuki Muriithi
2025-07-08Enable filtering of groups list and length limiting.Frederick Muriuki Muriithi
2025-07-07Enable limiting the number of items returned.Frederick Muriuki Muriithi
2025-07-07Check "Content-Type" header. Also process get params.Frederick Muriuki Muriithi
* Use the "Content-Type" value to check whether or not to attempt to read the sent values as json * Process also the get parameter, to allow the endpoints to be slightly more flexible (this probably breaks how HTTP should work).
2025-07-03Fix minor issues caught by mypy.Frederick Muriuki Muriithi
2025-07-03Bugfix: Fix clauses for user listing query.Frederick Muriuki Muriithi
2025-07-03Fix some linting issues.Frederick Muriuki Muriithi
2025-07-03Bugfix: Build up "WHERE" clauses correctlyFrederick Muriuki Muriithi
Have the email and name checked with "OR" where both are present.
2025-07-03Provide missing symbol.Frederick Muriuki Muriithi
2025-07-03Bugfix: Set the correct value.Frederick Muriuki Muriithi
2025-06-25Delete system users.Frederick Muriuki Muriithi
2025-06-24Search in names too. Fix query params.Frederick Muriuki Muriithi
2025-06-24Enable filtering of data, and limiting length.Frederick Muriuki Muriithi
2025-06-11Fix code issue caught by type-checker.Frederick Muriuki Muriithi
2025-06-11Fix code issues caught by the linter.Frederick Muriuki Muriithi
2025-06-09Add inbredset-group resource type in unlinked_data functionzsloan
This still needs to be implemented, but this commit prevents the key error
2025-06-09Enable linking multiple data items to a resource in single request.Frederick Muriuki Muriithi
2025-06-09Use more flexible check for authorisation.Frederick Muriuki Muriithi
Use the more flexible check for authorisation that a user has on a specific resource.
2025-06-09Add function to fetch the wrapper resource for a specific group.Frederick Muriuki Muriithi
2025-06-09Add a function to fetch the system resource.Frederick Muriuki Muriithi
2025-06-09Check for a user's privileges on a particular resource.Frederick Muriuki Muriithi
Add a general function to check that a particular user has certain privileges on a particular resource.
2025-06-09Allow linking of data by passing the raw ids too.Frederick Muriuki Muriithi
2025-05-06Fix failing mypy.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-05-05Fix "C0301: Line too long" pylint error.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-03-28Handle error raised in the case the request is not JSONFrederick Muriuki Muriithi
2025-03-28Add link to register account to sign-in pagezsloan
2025-03-28Simplify line where it was unnecessarily checking request.json twicezsloan
2025-03-14Add missing fix: Make display of minutes more human-friendly.Frederick Muriuki Muriithi
2025-03-14Make display of number of minutes more human-friendly.Frederick Muriuki Muriithi
2025-03-14Move expiry of auth-based emails into a config variable.Frederick Muriuki Muriithi
To ease setting up of value without changing code, move the value out into a configuration variable.
2025-02-26Fix pylint errors.Frederick Muriuki Muriithi
2025-02-26Remove use of obsolete flask_helpers module.Frederick Muriuki Muriithi
Create the requests in the class, as appropriate, checking for content-type.
2025-02-17Use default sys-admin group if user is not a member of any group.Frederick Muriuki Muriithi
Instead of failing, assign any population resource to the default system admin group, if the user is not a member of any group.
2025-02-17Provide a way to fetch a system-administrator's group.Frederick Muriuki Muriithi
2025-02-03Left-align the labels.genenetwork-system-v1.0.0Frederick Muriuki Muriithi
2025-02-03Remove pagetitle values.Frederick Muriuki Muriithi
2025-02-03Improve layout and styling for the login page.Frederick Muriuki Muriithi
2025-02-03Improve page copy for the authorisation server.Frederick Muriuki Muriithi
2025-01-10Update server to support non-expiring JWTs.Frederick Muriuki Muriithi
2025-01-10Override `generate` to generate tokens without expiry.Frederick Muriuki Muriithi
2025-01-10Rework `get_token_data()` to only set 'exp' if its provided.Frederick Muriuki Muriithi
2025-01-10Allow for non-expiring JWT tokens.Frederick Muriuki Muriithi
2024-12-31Log out exceptions with the application's loggerFrederick Muriuki Muriithi