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2024-04-20Use the response_type in the request.Frederick Muriuki Muriithi
2024-04-20Setup token validators at app initialisation.Frederick Muriuki Muriithi
2024-04-20Define and register grant for JWT tokens.Frederick Muriuki Muriithi
2024-04-18Add the `SSL_KEY_PAIR_*` configurationsFrederick Muriuki Muriithi
Add paths to the SSL key-pair used for signing and verifying the JWTs.
2024-04-02Remove unused group argument.Frederick Muriuki Muriithi
2024-03-30Update call: Drop unused argument in call.Frederick Muriuki Muriithi
2024-03-26Rename to gn-authFrederick Muriuki Muriithi
2024-03-25Flatten roles list in "get_user_roles_on_resource."Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/views.py: Import operator. (get_user_roles_on_resource): Flatten roles list. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Return empty tuples when metadata is queried for data.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/models.py (resource_data): A metadata resource is not linked to any data so we return an empty tuple. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Add extra endpoint to get user authorisation given a resource name.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/models.py (user_roles_on_resources): New function. * gn_auth/auth/authorisation/resources/views.py (resources_authorisation): New endpoint. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Revert "Add an extra endpoint for metadata authorisation."Munyoki Kilyungi
This reverts commit f5e833c0d72eaec80425203b15210ed304cc4811. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Rename klass to class_.Munyoki Kilyungi
As recommended by: <https://barry.warsaw.us/software/STYLEGUIDE.txt> which is a reference for pep-8. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Fix typo.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Replace "the" prefix with an underscore.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Delete dead comment.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Rename the_user -> _user.Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/models/oauth2client.py (client): Rename the_user -> _user. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Delete commented out import.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Rename "the_code" to "_code".Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/grants/authorisation_code_grant.py (__query_authorization_code__): Rename the_code -> _code. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Delete a debug print query.Munyoki Kilyungi
Debugging this if necessary should be handled by pdb. * gn_auth/auth/authentication/users.py (fetch_users): Delete print statement. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Rename users -> fetch_users.Munyoki Kilyungi
Use verbs for methods. * gn_auth/auth/authentication/oauth2/models/oauth2client.py (OAuth2Client): (oauth2_clients): Rename users -> fetch_users. * gn_auth/auth/authentication/users.py (users): Ditto. (fetch_users): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Delete dictify.Munyoki Kilyungi
This module is redundant since dataclasses already provides the asdict method. * gn_auth/auth/dictify.py: Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Remove unused imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define AuthorisationCode using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/models/authorization_code.py: Import dataclass, asdict, cached_property and AuthorizationCodeMixin. Remove NamedTuple import. (AuthorisationCode): Use frozen dataclass and explicitly inherit from AuthorizationCodeMixin. Delete unnecessary comment. (AuthorisationCode.response_type): Make this a cached_property. (AuthorisationCode.get_nonce): Delete. This is not defined in the RFC6749 spec. (save_authorisation_code): Replace _asdict() with asdict(...). Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define Resource/ResourceCategory using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/base.py: Import dataclass and asdict. Remove NamedTuple and dictify. (ResourceCategory): Use frozen dataclass. (ResourceCategory.dictify): Delete. (Resource): Use frozen dataclass. (Resource.dictify): Delete. * gn_auth/auth/authorisation/resources/models.py: Delete dictify import. (assign_resource_user): Replace dictify with asdict. (unassign_resource_user): Ditto. * gn_auth/auth/authorisation/resources/views.py: Import asdict. Remove dictify import. (list_resource_categories): Replace dictify with asdict. (create_resource): Ditto. (view_resource): Ditto. (__safe_get_requests_page__): Ditto. * gn_auth/auth/authorisation/users/views.py: (user_resources): Replace dictify with asdict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Rename "the_client" to "_client".Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Remove unused imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Auto-pep8 this file.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define Privilege/Role using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/privileges.py: Import dataclass. Remove NamedTuple import. (Privilege): Use frozen dataclass. (Privelege.dictify): Delete. * gn_auth/auth/authorisation/resources/groups/views.py: Import dataclasses.asdict. (group_privileges): Replace dictify with asdict. (add_priv_to_role): Ditto. (delete_priv_from_role): Ditto. * gn_auth/auth/authorisation/resources/models.py: (assign_resource_user): Replace dictify with asdict. (unassign_resource_user): Ditto. * gn_auth/auth/authorisation/resources/system/views.py: Import dataclasses.asdict. Remove dictify import. (system_roles): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/views.py: (resource_users): Replace dictify with asdict. (resources_authorisation): Ditto. * gn_auth/auth/authorisation/roles/models.py: Remove dictify and NameTuple import. (Role): Use frozen dataclass. (Role.dictify): Replace dictify(priv) with asdict(priv). * gn_auth/auth/authorisation/roles/views.py: Import dataclasses.asdict. Remove dictify import. (view_role): Replace dictify with asdict. * gn_auth/auth/authorisation/users/views.py: (user_roles): Replace dictify with asdict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define OAuth2Client using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/models/oauth2client.py: Import dataclass, cached_property and ClientMixin. Remove NamedTuple import. (OAuth2Client): Use frozen dataclass and explicitly inherit from ClientMixin. (OAuth2Client.token_endpoint_auth_method): Make this a cached property. (OAuth2Client.client_type): Ditto. (OAuth2Client.id): Ditto. (OAuth2Client.grant_types): Ditto. (OAuth2Client.redirect_uris): Ditto. (OAuth2Client.response_types): Ditto. (OAuth2Client.scope): Ditto. (OAuth2Client.get_allowed_scope): Autopep-8 it. (client): Autopep-8 it and use kw args for OAuthClient. (client_by_id_and_secret): Ditto. (oauth2_clients): Ditto. (save_client): Ditto. (delete_client): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define GroupRole using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/groups/models.py: Import dataclasses.asdict. Remove dictify import. (GroupRole): Use frozen dataclass. (GroupRole.dictify): Replace dictify(...) with self.role.dictify(). * gn_auth/auth/authorisation/resources/groups/views.py: (group_roles): Replace dictify with asdict. (view_group_role): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define Group using a frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/data/genotypes.py: Import dataclasses.asdict. (link_genotype_data): Replace dictify with asdict. * gn_auth/auth/authorisation/data/mrna.py: Import dataclasses.asdict. (link_mrna_data): Replace dictify with asdict. * gn_auth/auth/authorisation/data/phenotypes.py: Import dataclasses.asdict. (link_phenotype_data): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/groups/models.py: Import dataclass. (Group): Use frozen dataclass. (Group.dictify): Delete. (GroupRole.dictify): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/groups/views.py: Import dataclasses.asdict. Remove dictify import. (list_groups): Replace dictify with asdict. (create_group): Ditto. * gn_auth/auth/authorisation/resources/views.py: (resource_users): Replace dictify with asdict. * gn_auth/auth/authorisation/users/views.py: Import dataclasses.asdict. Remove dictify import. (user_details): Replace dictify with asdict. (user_group): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define OAuth2Token using a frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/endpoints/introspection.py (IntrospectionEndpoint.introspect_token): Replace token.get_scope() with token.scope. * gn_auth/auth/authentication/oauth2/models/oauth2token.py: Import dataclass, TokenMixin and cached_property. Delete NamedTuple import. (OAuth2Token): Use a frozen dataclass and explicitly inherit from TokenMixin. (OAuth2Token.expires_at): Make this a cached_property. (OAuth2Token.check_client): Add the "# pylint ..." in it's own line. Tested-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define User using a frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authentication/users.py: Import dataclass. Remove NamedTuple and Tuple import. (User): Use a frozen dataclass. (User.get_user_id): Delete. (User.dictify): Ditto. * gn_auth/auth/authorisation/data/views.py: Import dataclasses.dict. (authorisation): Replace user._asdict() with asdict(user). (metadata_resources): Ditto. * gn_auth/auth/authorisation/resources/groups/views.py: (group_members): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/models.py: Import dataclasses.asdict. (assign_resource_user): Replace dictify(user) with asdict(user). (unassign_resource_user): Ditto. * gn_auth/auth/authorisation/resources/views.py: (resource_users): Replace dictify with asdict. * gn_auth/auth/authorisation/users/masquerade/views.py: Import dataclasses.asdict. (masquerade): Replace masq_user._asdict() with asdict(masq_user). * gn_auth/auth/authorisation/users/views.py: (list_all_users): Replace dictify with asdict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-08Correctly check for the refresh_token.Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/endpoints/utilities.py (query_token): Replace "if" with "match" syntax. Also, correctly check for the "refresh_token". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-08Replace "if" branching with "monad_from_none_or_value".Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/models/authorization_code.py: Import "monad_from_none_or_value". (authorisation_code): Replace if branching for Nothing/Just check with "monad_from_none_or_value". * gn_auth/auth/authentication/oauth2/models/oauth2token.py: Import "monad_from_none_or_value". (__token_from_resultset__): Replace if branching for Nothing/Just check with "monad_from_none_or_value". (token_by_access_token): Ditto. (token_by_refresh_token): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-08Rename "__5_MINUTES__" to "EXPIRY_IN_SECONDS".Munyoki Kilyungi
* gn_auth/auth/authentication/oauth2/models/authorization_code.py (AuthorisationCode.__5_MINUTES__): Rename this to EXPIRY_IN_SECONDS. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-08Explicitly add keyword arguments to AuthorisationCode.Munyoki Kilyungi
This improves readability. * gn_auth/auth/authentication/oauth2/grants/authorisation_code_grant.py (AuthorisationCodeGrant.save_authorization_code): Use keyword arguments. * gn_auth/auth/authentication/oauth2/models/authorization_code.py (authorisation_code): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-08Remove "raise" in auth.db Protocol classes.Munyoki Kilyungi
* gn_auth/auth/db/protocols.py (DbCursor): Remove "raise" in DBCursor Protocol. See: <https://typing.readthedocs.io/en/latest/spec/protocol.html>
2024-03-04Add an extra endpoint for metadata authorisation.Munyoki Kilyungi
* gn_auth/auth/authorisation/data/views.py: (metadata_resources): New end-point for authorising metadata data. * gn_auth/auth/authorisation/resources/models.py: Import sqlite3.Row. (__metadata_resource_data__): New function. (__assign_resource_owner_role__): Add __metadata_resource_data__ to the "resource_data_function" map. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-04Fix minor typo.Munyoki Kilyungi
* gn_auth/auth/authorisation/data/views.py (authorisation): Fix typo. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-04Remove redundant error code for InvalidData.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-01Put `GN_AUTH_SECRETS` config in the main configuration file.Frederick Muriuki Muriithi
2024-03-01Configs: Check that all mandatory settings exist and are non-empty.Frederick Muriuki Muriithi
2024-02-29Allow POST for JSON requests.Frederick Muriuki Muriithi
2024-02-28Handle the "NotFoundError" exception at the route levelFrederick Muriuki Muriithi
Handle the "NotFoundError" exception at the route level, since if we do not, the application level handler takes over and simply returns a JSON response with the details of the failure.
2024-02-27Remove use of instance path in configurations.Frederick Muriuki Muriithi
2024-02-27Update base template.Frederick Muriuki Muriithi
2024-01-30Add exception traces to error outputs.Frederick Muriuki Muriithi
2024-01-29Error handling: Handle 404 error.Frederick Muriuki Muriithi
2023-12-18Provide the correct Redis keyFrederick Muriuki Muriithi
Previously, when the user would request to either import or delete the collections they had created before logging in, the system would try deleting the collections from the wrong key, leading to the collections still showing up. This commit fixes that by providing the code with the correct Redis key to act upon.
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-09 02:49:44 +0000