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2024-06-10Provide some endpoints for privileges.Frederick Muriuki Muriithi
2024-06-10Use new db resultset conversion functions.Frederick Muriuki Muriithi
2024-06-10Provide functions to convert DB rows into data objects.Frederick Muriuki Muriithi
2024-06-10Provide resource roles endpointFrederick Muriuki Muriithi
Provide an endpoint that returns all the roles that a particular user has on a specific resource.
2024-06-10Share reusable functionFrederick Muriuki Muriithi
2024-06-07Replace `…/group/roles` endpoint with `…/resource/…/roles` endpoint.Frederick Muriuki Muriithi
The `…/group/roles` endpoint relied on the now deleted `group_roles` table that caused the implementation to be prone to privilege escalation attacks. This commit provides the `…/resource/…/roles` endpoint that provides the required functionality without the exposure.
2024-06-07Update role assignment: user resource_roles tableFrederick Muriuki Muriithi
We no longer use the group_roles table, and have moved to the less privilege-escalation-prone resource_roles table. This commit updates the queries to use the newer resource_roles table.
2024-06-06Add deprecation warning to /group-privileges endpoint function.Frederick Muriuki Muriithi
2024-06-05Bug: Point to correct key to avoid errorsFrederick Muriuki Muriithi
2024-06-04Redirect appropriately when verifying emails.Frederick Muriuki Muriithi
2024-06-03Handle unverified emailsFrederick Muriuki Muriithi
If a user provides the correct credentials to login, but they are unverified, redirect them to the email verification page, where they are provided with a chance to verify their email, or send a new verification code.
2024-06-03Provide endpoint for verification and do verificationFrederick Muriuki Muriithi
2024-06-03Send verification email on registration.Frederick Muriuki Muriithi
2024-06-03Use asdict(...)Frederick Muriuki Muriithi
Use dataclasses.asdict function to generate the dict that will be used for the response rather than building it up manually.
2024-06-03Move user creation from db resultset into static methodFrederick Muriuki Muriithi
Creation of a User object from the database resultset will mostly be the same. This commit moves the repetitive code into a static method that can be called wherever we need it. This improves maintainability, since we only ever need to do an update in one place now.
2024-05-13Fix myriad of linting errorFrederick Muriuki Muriithi
These linting errors can't be rebased into the newer commits.
2024-05-02Delete a client's public key.Frederick Muriuki Muriithi
2024-05-02Register a client's public key(s).Frederick Muriuki Muriithi
2024-05-02Fix editing of grant_typesFrederick Muriuki Muriithi
This commit makes the values for the grant types dynamic, enabling adding and/or removing of supported grant types. The editing was not updating the grant type values correctly either - we update the metadata key from "grants" to "grant_types" to fix that.
2024-05-02Use same name as register-client formFrederick Muriuki Muriithi
2024-05-02Make registration of grant-types more flexible.Frederick Muriuki Muriithi
2024-05-02use dataclasses' asdict() function.Frederick Muriuki Muriithi
2024-05-02Use user-provided values rather than hard-coded values.Frederick Muriuki Muriithi
2024-05-02Add error checking to form input data.Frederick Muriuki Muriithi
2024-04-30Create a JWT token when querying a user's role an a resource.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/views.py: Import time. (get_user_roles_on_resource): Add a JWT bearer token to the responses's header. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-24Move the errors module up one level to break circular dependencies.Frederick Muriuki Muriithi
2024-04-23pylint: Fix linting errors.Frederick Muriuki Muriithi
2024-04-02Remove unused group argument.Frederick Muriuki Muriithi
2024-03-30Update call: Drop unused argument in call.Frederick Muriuki Muriithi
2024-03-25Flatten roles list in "get_user_roles_on_resource."Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/views.py: Import operator. (get_user_roles_on_resource): Flatten roles list. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Return empty tuples when metadata is queried for data.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/models.py (resource_data): A metadata resource is not linked to any data so we return an empty tuple. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Add extra endpoint to get user authorisation given a resource name.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/models.py (user_roles_on_resources): New function. * gn_auth/auth/authorisation/resources/views.py (resources_authorisation): New endpoint. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Revert "Add an extra endpoint for metadata authorisation."Munyoki Kilyungi
This reverts commit f5e833c0d72eaec80425203b15210ed304cc4811. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Fix typo.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Replace "the" prefix with an underscore.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21Delete dead comment.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Remove unused imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define Resource/ResourceCategory using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/base.py: Import dataclass and asdict. Remove NamedTuple and dictify. (ResourceCategory): Use frozen dataclass. (ResourceCategory.dictify): Delete. (Resource): Use frozen dataclass. (Resource.dictify): Delete. * gn_auth/auth/authorisation/resources/models.py: Delete dictify import. (assign_resource_user): Replace dictify with asdict. (unassign_resource_user): Ditto. * gn_auth/auth/authorisation/resources/views.py: Import asdict. Remove dictify import. (list_resource_categories): Replace dictify with asdict. (create_resource): Ditto. (view_resource): Ditto. (__safe_get_requests_page__): Ditto. * gn_auth/auth/authorisation/users/views.py: (user_resources): Replace dictify with asdict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Remove unused imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Auto-pep8 this file.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define Privilege/Role using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/privileges.py: Import dataclass. Remove NamedTuple import. (Privilege): Use frozen dataclass. (Privelege.dictify): Delete. * gn_auth/auth/authorisation/resources/groups/views.py: Import dataclasses.asdict. (group_privileges): Replace dictify with asdict. (add_priv_to_role): Ditto. (delete_priv_from_role): Ditto. * gn_auth/auth/authorisation/resources/models.py: (assign_resource_user): Replace dictify with asdict. (unassign_resource_user): Ditto. * gn_auth/auth/authorisation/resources/system/views.py: Import dataclasses.asdict. Remove dictify import. (system_roles): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/views.py: (resource_users): Replace dictify with asdict. (resources_authorisation): Ditto. * gn_auth/auth/authorisation/roles/models.py: Remove dictify and NameTuple import. (Role): Use frozen dataclass. (Role.dictify): Replace dictify(priv) with asdict(priv). * gn_auth/auth/authorisation/roles/views.py: Import dataclasses.asdict. Remove dictify import. (view_role): Replace dictify with asdict. * gn_auth/auth/authorisation/users/views.py: (user_roles): Replace dictify with asdict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define GroupRole using frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/resources/groups/models.py: Import dataclasses.asdict. Remove dictify import. (GroupRole): Use frozen dataclass. (GroupRole.dictify): Replace dictify(...) with self.role.dictify(). * gn_auth/auth/authorisation/resources/groups/views.py: (group_roles): Replace dictify with asdict. (view_group_role): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define Group using a frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authorisation/data/genotypes.py: Import dataclasses.asdict. (link_genotype_data): Replace dictify with asdict. * gn_auth/auth/authorisation/data/mrna.py: Import dataclasses.asdict. (link_mrna_data): Replace dictify with asdict. * gn_auth/auth/authorisation/data/phenotypes.py: Import dataclasses.asdict. (link_phenotype_data): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/groups/models.py: Import dataclass. (Group): Use frozen dataclass. (Group.dictify): Delete. (GroupRole.dictify): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/groups/views.py: Import dataclasses.asdict. Remove dictify import. (list_groups): Replace dictify with asdict. (create_group): Ditto. * gn_auth/auth/authorisation/resources/views.py: (resource_users): Replace dictify with asdict. * gn_auth/auth/authorisation/users/views.py: Import dataclasses.asdict. Remove dictify import. (user_details): Replace dictify with asdict. (user_group): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-13Define User using a frozen dataclass.Munyoki Kilyungi
* gn_auth/auth/authentication/users.py: Import dataclass. Remove NamedTuple and Tuple import. (User): Use a frozen dataclass. (User.get_user_id): Delete. (User.dictify): Ditto. * gn_auth/auth/authorisation/data/views.py: Import dataclasses.dict. (authorisation): Replace user._asdict() with asdict(user). (metadata_resources): Ditto. * gn_auth/auth/authorisation/resources/groups/views.py: (group_members): Replace dictify with asdict. * gn_auth/auth/authorisation/resources/models.py: Import dataclasses.asdict. (assign_resource_user): Replace dictify(user) with asdict(user). (unassign_resource_user): Ditto. * gn_auth/auth/authorisation/resources/views.py: (resource_users): Replace dictify with asdict. * gn_auth/auth/authorisation/users/masquerade/views.py: Import dataclasses.asdict. (masquerade): Replace masq_user._asdict() with asdict(masq_user). * gn_auth/auth/authorisation/users/views.py: (list_all_users): Replace dictify with asdict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-04Add an extra endpoint for metadata authorisation.Munyoki Kilyungi
* gn_auth/auth/authorisation/data/views.py: (metadata_resources): New end-point for authorising metadata data. * gn_auth/auth/authorisation/resources/models.py: Import sqlite3.Row. (__metadata_resource_data__): New function. (__assign_resource_owner_role__): Add __metadata_resource_data__ to the "resource_data_function" map. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-04Fix minor typo.Munyoki Kilyungi
* gn_auth/auth/authorisation/data/views.py (authorisation): Fix typo. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-04Remove redundant error code for InvalidData.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-29Allow POST for JSON requests.Frederick Muriuki Muriithi
2024-02-28Handle the "NotFoundError" exception at the route levelFrederick Muriuki Muriithi
Handle the "NotFoundError" exception at the route level, since if we do not, the application level handler takes over and simply returns a JSON response with the details of the failure.
2023-12-18Provide the correct Redis keyFrederick Muriuki Muriithi
Previously, when the user would request to either import or delete the collections they had created before logging in, the system would try deleting the collections from the wrong key, leading to the collections still showing up. This commit fixes that by providing the code with the correct Redis key to act upon.
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-10 06:08:30 +0000