| Age | Commit message (Expand) | Author |
|---|
| 2024-05-02 | Delete a client's public key. | Frederick Muriuki Muriithi |
| 2024-05-02 | Register a client's public key(s). | Frederick Muriuki Muriithi |
| 2024-05-02 | Fix editing of grant_types...This commit makes the values for the grant types dynamic, enabling
adding and/or removing of supported grant types. The editing was not
updating the grant type values correctly either - we update the
metadata key from "grants" to "grant_types" to fix that.
| Frederick Muriuki Muriithi |
| 2024-05-02 | Use same name as register-client form | Frederick Muriuki Muriithi |
| 2024-05-02 | Make registration of grant-types more flexible. | Frederick Muriuki Muriithi |
| 2024-05-02 | use dataclasses' asdict() function. | Frederick Muriuki Muriithi |
| 2024-05-02 | Use user-provided values rather than hard-coded values. | Frederick Muriuki Muriithi |
| 2024-05-02 | Add error checking to form input data. | Frederick Muriuki Muriithi |
| 2024-04-30 | Create a JWT token when querying a user's role an a resource....* gn_auth/auth/authorisation/resources/views.py: Import time.
(get_user_roles_on_resource): Add a JWT bearer token to the
responses's header.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-24 | Move the errors module up one level to break circular dependencies. | Frederick Muriuki Muriithi |
| 2024-04-23 | pylint: Fix linting errors. | Frederick Muriuki Muriithi |
| 2024-04-02 | Remove unused group argument. | Frederick Muriuki Muriithi |
| 2024-03-30 | Update call: Drop unused argument in call. | Frederick Muriuki Muriithi |
| 2024-03-25 | Flatten roles list in "get_user_roles_on_resource."...* gn_auth/auth/authorisation/resources/views.py: Import operator.
(get_user_roles_on_resource): Flatten roles list.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-21 | Return empty tuples when metadata is queried for data....* gn_auth/auth/authorisation/resources/models.py (resource_data): A
metadata resource is not linked to any data so we return an empty
tuple.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-21 | Add extra endpoint to get user authorisation given a resource name....* gn_auth/auth/authorisation/resources/models.py
(user_roles_on_resources): New function.
* gn_auth/auth/authorisation/resources/views.py
(resources_authorisation): New endpoint.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-21 | Revert "Add an extra endpoint for metadata authorisation."...This reverts commit f5e833c0d72eaec80425203b15210ed304cc4811.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-21 | Fix typo....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-21 | Replace "the" prefix with an underscore....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-21 | Delete dead comment....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Remove unused imports....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Define Resource/ResourceCategory using frozen dataclass....* gn_auth/auth/authorisation/resources/base.py: Import dataclass and
asdict. Remove NamedTuple and dictify.
(ResourceCategory): Use frozen dataclass.
(ResourceCategory.dictify): Delete.
(Resource): Use frozen dataclass.
(Resource.dictify): Delete.
* gn_auth/auth/authorisation/resources/models.py: Delete dictify
import.
(assign_resource_user): Replace dictify with asdict.
(unassign_resource_user): Ditto.
* gn_auth/auth/authorisation/resources/views.py: Import asdict.
Remove dictify import.
(list_resource_categories): Replace dictify with asdict.
(create_resource): Ditto.
(view_resource): Ditto.
(__safe_get_requests_page__): Ditto.
* gn_auth/auth/authorisation/users/views.py:
(user_resources): Replace dictify with asdict.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Remove unused imports....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Auto-pep8 this file....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Define Privilege/Role using frozen dataclass....* gn_auth/auth/authorisation/privileges.py: Import dataclass. Remove
NamedTuple import.
(Privilege): Use frozen dataclass.
(Privelege.dictify): Delete.
* gn_auth/auth/authorisation/resources/groups/views.py: Import
dataclasses.asdict.
(group_privileges): Replace dictify with asdict.
(add_priv_to_role): Ditto.
(delete_priv_from_role): Ditto.
* gn_auth/auth/authorisation/resources/models.py:
(assign_resource_user): Replace dictify with asdict.
(unassign_resource_user): Ditto.
* gn_auth/auth/authorisation/resources/system/views.py: Import
dataclasses.asdict. Remove dictify import.
(system_roles): Replace dictify with asdict.
* gn_auth/auth/authorisation/resources/views.py:
(resource_users): Replace dictify with asdict.
(resources_authorisation): Ditto.
* gn_auth/auth/authorisation/roles/models.py: Remove dictify and
NameTuple import.
(Role): Use frozen dataclass.
(Role.dictify): Replace dictify(priv) with asdict(priv).
* gn_auth/auth/authorisation/roles/views.py: Import
dataclasses.asdict. Remove dictify import.
(view_role): Replace dictify with asdict.
* gn_auth/auth/authorisation/users/views.py:
(user_roles): Replace dictify with asdict.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Define GroupRole using frozen dataclass....* gn_auth/auth/authorisation/resources/groups/models.py: Import
dataclasses.asdict. Remove dictify import.
(GroupRole): Use frozen dataclass.
(GroupRole.dictify): Replace dictify(...) with self.role.dictify().
* gn_auth/auth/authorisation/resources/groups/views.py:
(group_roles): Replace dictify with asdict.
(view_group_role): Ditto.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Define Group using a frozen dataclass....* gn_auth/auth/authorisation/data/genotypes.py: Import
dataclasses.asdict.
(link_genotype_data): Replace dictify with asdict.
* gn_auth/auth/authorisation/data/mrna.py: Import dataclasses.asdict.
(link_mrna_data): Replace dictify with asdict.
* gn_auth/auth/authorisation/data/phenotypes.py: Import
dataclasses.asdict.
(link_phenotype_data): Replace dictify with asdict.
* gn_auth/auth/authorisation/resources/groups/models.py: Import
dataclass.
(Group): Use frozen dataclass.
(Group.dictify): Delete.
(GroupRole.dictify): Replace dictify with asdict.
* gn_auth/auth/authorisation/resources/groups/views.py: Import
dataclasses.asdict. Remove dictify import.
(list_groups): Replace dictify with asdict.
(create_group): Ditto.
* gn_auth/auth/authorisation/resources/views.py:
(resource_users): Replace dictify with asdict.
* gn_auth/auth/authorisation/users/views.py: Import
dataclasses.asdict. Remove dictify import.
(user_details): Replace dictify with asdict.
(user_group): Ditto.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-13 | Define User using a frozen dataclass....* gn_auth/auth/authentication/users.py: Import dataclass. Remove
NamedTuple and Tuple import.
(User): Use a frozen dataclass.
(User.get_user_id): Delete.
(User.dictify): Ditto.
* gn_auth/auth/authorisation/data/views.py: Import dataclasses.dict.
(authorisation): Replace user._asdict() with asdict(user).
(metadata_resources): Ditto.
* gn_auth/auth/authorisation/resources/groups/views.py:
(group_members): Replace dictify with asdict.
* gn_auth/auth/authorisation/resources/models.py: Import
dataclasses.asdict.
(assign_resource_user): Replace dictify(user) with asdict(user).
(unassign_resource_user): Ditto.
* gn_auth/auth/authorisation/resources/views.py:
(resource_users): Replace dictify with asdict.
* gn_auth/auth/authorisation/users/masquerade/views.py: Import
dataclasses.asdict.
(masquerade): Replace masq_user._asdict() with asdict(masq_user).
* gn_auth/auth/authorisation/users/views.py:
(list_all_users): Replace dictify with asdict.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-04 | Add an extra endpoint for metadata authorisation....* gn_auth/auth/authorisation/data/views.py: (metadata_resources): New
end-point for authorising metadata data.
* gn_auth/auth/authorisation/resources/models.py: Import sqlite3.Row.
(__metadata_resource_data__): New function.
(__assign_resource_owner_role__): Add __metadata_resource_data__
to the "resource_data_function" map.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-04 | Fix minor typo....* gn_auth/auth/authorisation/data/views.py (authorisation): Fix typo.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-03-04 | Remove redundant error code for InvalidData....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-02-29 | Allow POST for JSON requests. | Frederick Muriuki Muriithi |
| 2024-02-28 | Handle the "NotFoundError" exception at the route level...Handle the "NotFoundError" exception at the route level, since if we
do not, the application level handler takes over and simply returns a
JSON response with the details of the failure.
| Frederick Muriuki Muriithi |
| 2023-12-18 | Provide the correct Redis key...Previously, when the user would request to either import or delete the
collections they had created before logging in, the system would try
deleting the collections from the wrong key, leading to the
collections still showing up.
This commit fixes that by providing the code with the correct Redis
key to act upon.
| Frederick Muriuki Muriithi |
| 2023-11-23 | Scripts: Update script for newer db schema...The schema changed a while back, and the script that is used to make
all existing data public needs to be updated for the new schema. This
commit does exactly that.
| Frederick Muriuki Muriithi |
| 2023-11-22 | Move system admin creation...Make the system admin creation code part of the core system, and
simply call it from the script(s). This will help with maintenance,
since the changes are done in a single place only.
| Frederick Muriuki Muriithi |
| 2023-11-13 | Bug: Fix typo in query | Frederick Muriuki Muriithi |
| 2023-11-13 | Update check for admins | Frederick Muriuki Muriithi |
| 2023-11-02 | mypy: Fix typing errors. | Frederick Muriuki Muriithi |
| 2023-11-02 | pylint: Fix linting errors. | Frederick Muriuki Muriithi |
| 2023-10-12 | Bugs: Fix query and provide default function for inbredset-group | Frederick Muriuki Muriithi |
| 2023-10-10 | Get authorisation by resource_ids...Add an endpoint to help users get the resources authorisation by the
resource ids.
| Frederick Muriuki Muriithi |
| 2023-10-10 | Temporarily return no data for resources of types system and group. | Frederick Muriuki Muriithi |
| 2023-10-09 | Fetch InbredSet group resource ID by SpeciesId and InbredSetId...Get the resource used to control access to the InbredSet group by that
group's SpeciesId and InbredSetId.
| Frederick Muriuki Muriithi |
| 2023-09-27 | typing: fix and ignore typing issues. | Frederick Muriuki Muriithi |
| 2023-09-27 | linting: Remove unused import, handle unused variable | Frederick Muriuki Muriithi |
| 2023-09-27 | Bug: Fix issue with viewing resources of type "group". | Frederick Muriuki Muriithi |
| 2023-09-26 | Update query...Replace `group_user_roles_on_resources` table with `user_roles` for
the query that checks whether the user has appropriate permissions to
act on a specific resource.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Handle temporary edge cases...Fetching resource data: system and group categories of resources do
not have associated genetic data.
This commit adds some code to temporarily handle that case as an edge
case before I can devote more time to fixing the issue in a much
better way.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Add `public-view` role. Assign it to users....Add a new `public-view` role to be assigned to all users on all
resources that are defined as publicly viewable.
Update code to make assign `public-view` role to a newly registered
user for all publicly viewable roles.
Update the code to assign/revoke the `public-view` role to/from users
whenever the resource is toggled to and from being publicly viewable.
Ensure that `public-view` is not revoked from system-administrators.
Ensure that `public-view` is not revoked from the group administrators
of the group that owns the resource.
| Frederick Muriuki Muriithi |
