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2024-09-16Pass cursor rather than connection to create_resource functionFrederick Muriuki Muriithi
In order to decouple the `create_resource` function from the related functions that assign roles to users, this commit changes the code to pass in a cursor rather than a connection. The cursor will be the same cursor passed into the role assignment functions ensuring that the resource creation and role assignment happen in a single transaction.
2024-09-13Notes: Add note on some items that could go into hooks.Frederick Muriuki Muriithi
2024-08-30If config variables are not set, return empty string.Frederick Muriuki Muriithi
2024-08-21Only import anonymous collections if they contain traitszsloan
2024-08-21Update 'changed' field when traits are added or removed from collectionszsloan
2024-08-21Do actual password change.Frederick Muriuki Muriithi
2024-08-21Provide email and improve UI text/notification.Frederick Muriuki Muriithi
2024-08-20Save to DB then send emailFrederick Muriuki Muriithi
Separate the saving of the token from its sending.
2024-08-20Handle the "GET" part of the change-password requestFrederick Muriuki Muriithi
- Delete any expired tokens - Display the UI if token is valid, else redirect with error notification.
2024-08-20Pass GET parameters for correct redirection.Frederick Muriuki Muriithi
2024-08-20Fix query: Replace any existing token.Frederick Muriuki Muriithi
2024-08-19Generate token and send out "Forgot Password" emailFrederick Muriuki Muriithi
* Generate token to use for verifying the password-change request * Send out email with token
2024-08-15Fix a bunch of linting errors.Frederick Muriuki Muriithi
2024-08-15Reduce UI complexityFrederick Muriuki Muriithi
Providing both the "Enter Verification Token" and the "Send Verification Email" elements of the same user interface seems to confuse users. This commit ensures that the system will provide one or the other, but not both, depending on whether or not there is a pending verification token present for the user.
2024-08-15Import specific classes from the datetime module.Frederick Muriuki Muriithi
2024-08-15fix: bugs with generating auth tokensJohn Nduli
2024-08-15fix: bugs in masquerade apiJohn Nduli
2024-08-13Emails: Make "From" address configurableFrederick Muriuki Muriithi
We are running GeneNetwork in different environments. Each environment could have it's own separate domain, and need a different sender email to allow the underlying services to allow the emails through.
2024-08-08Bug: Prevent fall-through to verification if code is expired.Frederick Muriuki Muriithi
2024-08-08Forward email to email verification page.Frederick Muriuki Muriithi
2024-08-07Log out user registration errors at the `ERROR` log-level.Frederick Muriuki Muriithi
2024-08-05Fix linting errors.Frederick Muriuki Muriithi
2024-08-01Handle generic exception and return a value.enable-key-rotationFrederick Muriuki Muriithi
2024-07-31Enable registration of a public-jwks-uri for every clientFrederick Muriuki Muriithi
2024-07-31Enable external configuration of session expiry periodFrederick Muriuki Muriithi
Enable passing in the number of minutes that a session can be valid for. This enables the length of time that the session can last to be configurable rather than hard-coded.
2024-07-31Ignore warning from mypy.Frederick Muriuki Muriithi
2024-07-31Remove obsoleted SSL_PRIVATE_KEY configurationFrederick Muriuki Muriithi
With the key rotation in place, eliminate the use of the SSL_PRIVATE_KEY configuration which pointed to a specific non-changing JWK.
2024-07-17Add non-interactive script to assign make data public by default.Frederick Muriuki Muriithi
2024-06-25Roles: Get rid of use of GroupRole; use Role directly for resourcesFrederick Muriuki Muriithi
The GroupRole idea was flawed, and led to a critical bug that would have allowed privilege escalation. This uses the Role directly acting on a specific resource when assigning said role to a user.
2024-06-20Reorganise test fixtures. Fix tests and issues caught.Frederick Muriuki Muriithi
Reorganise test fixtures to more closely follow the design of the auth system. Fix the broken tests due to refactors and fix all issues caught by the running tests.
2024-06-18fix mypy errorsFrederick Muriuki Muriithi
2024-06-17Fix mypy errorsFrederick Muriuki Muriithi
2024-06-17Remove obsolete endpoint.Frederick Muriuki Muriithi
2024-06-17Fix linting errorsFrederick Muriuki Muriithi
2024-06-17Remove deprecated endpoint.Frederick Muriuki Muriithi
2024-06-17Retrieve complete list of a users roles on a particular resource.Frederick Muriuki Muriithi
2024-06-17Fix linting errors.Frederick Muriuki Muriithi
2024-06-17Create a resource role.Frederick Muriuki Muriithi
2024-06-17Don't save the resource-owner role as a resource roleFrederick Muriuki Muriithi
The 'resource-owner' role is a system-default role that applies to most resources, but should not be editable by users. This commit removes the code that was linking the role with each resource, leading it to being presented to the user as a editable role.
2024-06-17Use the form's json attribute to retrieve sent dataFrederick Muriuki Muriithi
The system uses JSON as the default communication format, so we use the form's json attribute to get any data sent.
2024-06-11Fix typo.Frederick Muriuki Muriithi
2024-06-11Temporary fix to retrieve users with read access to resource.Frederick Muriuki Muriithi
2024-06-11List users assigned a particular role on a specific resource.handle-role-privilege-escalationFrederick Muriuki Muriithi
2024-06-11Import the symbols we use in the module directly.Frederick Muriuki Muriithi
Import the modules directly to help with reducing line-length and unnecessary typing.
2024-06-11Unassign privilege from resource role.Frederick Muriuki Muriithi
2024-06-10Improve error messaging.Frederick Muriuki Muriithi
2024-06-10Fetch a role by its ID.Frederick Muriuki Muriithi
2024-06-10Provide some endpoints for privileges.Frederick Muriuki Muriithi
2024-06-10Use new db resultset conversion functions.Frederick Muriuki Muriithi
2024-06-10Provide functions to convert DB rows into data objects.Frederick Muriuki Muriithi