| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-06-11 | Fix code issue caught by type-checker. | Frederick Muriuki Muriithi | |
| 2025-06-11 | Fix code issues caught by the linter. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Add inbredset-group resource type in unlinked_data function | zsloan | |
| This still needs to be implemented, but this commit prevents the key error | |||
| 2025-06-09 | Enable linking multiple data items to a resource in single request. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Add function to fetch the wrapper resource for a specific group. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Add a function to fetch the system resource. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Check for a user's privileges on a particular resource. | Frederick Muriuki Muriithi | |
| Add a general function to check that a particular user has certain privileges on a particular resource. | |||
| 2025-02-26 | Fix pylint errors. | Frederick Muriuki Muriithi | |
| 2025-02-17 | Use default sys-admin group if user is not a member of any group. | Frederick Muriuki Muriithi | |
| Instead of failing, assign any population resource to the default system admin group, if the user is not a member of any group. | |||
| 2025-02-17 | Provide a way to fetch a system-administrator's group. | Frederick Muriuki Muriithi | |
| 2024-11-22 | Use code in gn_libs for MySQL/MariaDB connection. | Frederick Muriuki Muriithi | |
| Update the application to use the gn_libs code for connecting to the database, rather than using a local module. | |||
| 2024-10-09 | Put routes behind auth. | Frederick Muriuki Muriithi | |
| 2024-10-03 | BugFix: Fetch also roles assigned to user | Frederick Muriuki Muriithi | |
| When fetching the resource roles, fetch also any roles that are assigned to the user for that resource. | |||
| 2024-10-03 | BugFix: Remove duplicates from resources list | Frederick Muriuki Muriithi | |
| Issue: https://issues.genenetwork.org/issues/gn-auth/resources-duplicates-in-resources-list The query was returning multiple instances of the same resource in situations where a user had more than one role of a particular resource. | |||
| 2024-09-30 | Refactor: Initialise phenotype package | Frederick Muriuki Muriithi | |
| * Move code into a new phenotypes package and update references. * Add new functions to fetch linked resources from GN3 data identifiers — this is useful for auth * Provide endpoint to fetch authorisation details for a specific phenotype. | |||
| 2024-09-30 | Extract function to prevent circular dependencies. | Frederick Muriuki Muriithi | |
| 2024-09-26 | Add type annotation to variable. | Frederick Muriuki Muriithi | |
| 2024-09-26 | Bugfix: Fix bugs that were preventing creation of geno resource | Frederick Muriuki Muriithi | |
| Fix the bugs that were causing the creation of a genotype resource via API to fail. | |||
| 2024-09-25 | Implement genotype resource creation via API with resource data | Frederick Muriuki Muriithi | |
| Create the resource, assign the resource-owner role and link the resource's data in a single API call. | |||
| 2024-09-25 | Extract common role assignment to its own module | Frederick Muriuki Muriithi | |
| 2024-09-16 | Create population resource and assign appropriate roles | Frederick Muriuki Muriithi | |
| Provide an endpoint to create a new population resource (inbredset-group) and assign the active user with the appropriate privileges against the new resource. | |||
| 2024-09-16 | Rename blueprint and register it one level lower | Frederick Muriuki Muriithi | |
| Register the populations/inbredset blueprint with the "resources" blueprint rather than at the higher level "auth" blueprint to retain the hierarchy of the blueprints and make maintenance arguably easier. | |||
| 2024-09-16 | Pass cursor rather than connection to create_resource function | Frederick Muriuki Muriithi | |
| In order to decouple the `create_resource` function from the related functions that assign roles to users, this commit changes the code to pass in a cursor rather than a connection. The cursor will be the same cursor passed into the role assignment functions ensuring that the resource creation and role assignment happen in a single transaction. | |||
| 2024-09-13 | Notes: Add note on some items that could go into hooks. | Frederick Muriuki Muriithi | |
| 2024-08-15 | Fix a bunch of linting errors. | Frederick Muriuki Muriithi | |
| 2024-08-15 | fix: bugs in masquerade api | John Nduli | |
| 2024-08-05 | Fix linting errors. | Frederick Muriuki Muriithi | |
| 2024-08-01 | Handle generic exception and return a value.enable-key-rotation | Frederick Muriuki Muriithi | |
| 2024-07-31 | Ignore warning from mypy. | Frederick Muriuki Muriithi | |
| 2024-07-31 | Remove obsoleted SSL_PRIVATE_KEY configuration | Frederick Muriuki Muriithi | |
| With the key rotation in place, eliminate the use of the SSL_PRIVATE_KEY configuration which pointed to a specific non-changing JWK. | |||
| 2024-07-17 | Add non-interactive script to assign make data public by default. | Frederick Muriuki Muriithi | |
| 2024-06-25 | Roles: Get rid of use of GroupRole; use Role directly for resources | Frederick Muriuki Muriithi | |
| The GroupRole idea was flawed, and led to a critical bug that would have allowed privilege escalation. This uses the Role directly acting on a specific resource when assigning said role to a user. | |||
| 2024-06-20 | Reorganise test fixtures. Fix tests and issues caught. | Frederick Muriuki Muriithi | |
| Reorganise test fixtures to more closely follow the design of the auth system. Fix the broken tests due to refactors and fix all issues caught by the running tests. | |||
| 2024-06-18 | fix mypy errors | Frederick Muriuki Muriithi | |
| 2024-06-17 | Fix mypy errors | Frederick Muriuki Muriithi | |
| 2024-06-17 | Remove obsolete endpoint. | Frederick Muriuki Muriithi | |
| 2024-06-17 | Fix linting errors | Frederick Muriuki Muriithi | |
| 2024-06-17 | Remove deprecated endpoint. | Frederick Muriuki Muriithi | |
| 2024-06-17 | Retrieve complete list of a users roles on a particular resource. | Frederick Muriuki Muriithi | |
| 2024-06-17 | Fix linting errors. | Frederick Muriuki Muriithi | |
| 2024-06-17 | Create a resource role. | Frederick Muriuki Muriithi | |
| 2024-06-17 | Don't save the resource-owner role as a resource role | Frederick Muriuki Muriithi | |
| The 'resource-owner' role is a system-default role that applies to most resources, but should not be editable by users. This commit removes the code that was linking the role with each resource, leading it to being presented to the user as a editable role. | |||
| 2024-06-17 | Use the form's json attribute to retrieve sent data | Frederick Muriuki Muriithi | |
| The system uses JSON as the default communication format, so we use the form's json attribute to get any data sent. | |||
| 2024-06-11 | Fix typo. | Frederick Muriuki Muriithi | |
| 2024-06-11 | Temporary fix to retrieve users with read access to resource. | Frederick Muriuki Muriithi | |
| 2024-06-11 | List users assigned a particular role on a specific resource.handle-role-privilege-escalation | Frederick Muriuki Muriithi | |
| 2024-06-11 | Import the symbols we use in the module directly. | Frederick Muriuki Muriithi | |
| Import the modules directly to help with reducing line-length and unnecessary typing. | |||
| 2024-06-11 | Unassign privilege from resource role. | Frederick Muriuki Muriithi | |
| 2024-06-10 | Fetch a role by its ID. | Frederick Muriuki Muriithi | |
| 2024-06-10 | Use new db resultset conversion functions. | Frederick Muriuki Muriithi | |
 |
index : gn-auth | |
| GN authentication and authorization service |
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