| Age | Commit message (Expand) | Author |
|---|
| 2023-11-17 | Bug: Update query in script...Update query in script to provide resource_id for the user_roles tabel.
| Frederick Muriuki Muriithi |
| 2023-11-17 | Add styles. | Frederick Muriuki Muriithi |
| 2023-11-17 | Setup path to static paths correctly. | Frederick Muriuki Muriithi |
| 2023-11-13 | Bug: Fix typo in query | Frederick Muriuki Muriithi |
| 2023-11-13 | Update check for admins | Frederick Muriuki Muriithi |
| 2023-11-02 | Config: Use instance_path to load secrets. | Frederick Muriuki Muriithi |
| 2023-11-02 | mypy: Fix typing errors. | Frederick Muriuki Muriithi |
| 2023-11-02 | pylint: Fix linting errors. | Frederick Muriuki Muriithi |
| 2023-10-27 | Use upstream `yoyo-migrations` | Frederick Muriuki Muriithi |
| 2023-10-27 | Configuration: OAUTH2_SCOPE - provide clarification...Adds clarification that the `OAUTH2_SCOPE` setting is provided by
default, and so the final settings are only necessary to override
that.
| Frederick Muriuki Muriithi |
| 2023-10-12 | migrations: Create role for dealing with inbredset groups. | Frederick Muriuki Muriithi |
| 2023-10-12 | Bugs: Fix query and provide default function for inbredset-group | Frederick Muriuki Muriithi |
| 2023-10-12 | Assign role to act on InbredSets to admin. | Frederick Muriuki Muriithi |
| 2023-10-10 | Get authorisation by resource_ids...Add an endpoint to help users get the resources authorisation by the
resource ids.
| Frederick Muriuki Muriithi |
| 2023-10-10 | Temporarily return no data for resources of types system and group. | Frederick Muriuki Muriithi |
| 2023-10-09 | Fetch InbredSet group resource ID by SpeciesId and InbredSetId...Get the resource used to control access to the InbredSet group by that
group's SpeciesId and InbredSetId.
| Frederick Muriuki Muriithi |
| 2023-10-09 | scripts: Provide script to link InbredSets to auth system. | Frederick Muriuki Muriithi |
| 2023-10-02 | migrations: New migration - InbredSet Resources...Provide a new migration to create tables to handle the InbredSet
resources. The migration also sets up the resource category and the
related privileges.
| Frederick Muriuki Muriithi |
| 2023-09-29 | Make migrations directory a package. | Frederick Muriuki Muriithi |
| 2023-09-27 | Add missing import | Frederick Muriuki Muriithi |
| 2023-09-27 | List all packages to install. | Frederick Muriuki Muriithi |
| 2023-09-27 | Update setup.py...- Update the name and version
- Include the whole of gn-auth in the `packages` list
- Include any non-python files in the install
| Frederick Muriuki Muriithi |
| 2023-09-27 | Update dependency: Use upstream python-mypy | Frederick Muriuki Muriithi |
| 2023-09-27 | guix-bioinformatics: Update guix channel URL | Frederick Muriuki Muriithi |
| 2023-09-27 | typing: fix and ignore typing issues. | Frederick Muriuki Muriithi |
| 2023-09-27 | linting: Remove unused import, handle unused variable | Frederick Muriuki Muriithi |
| 2023-09-27 | Bug: Fix issue with viewing resources of type "group". | Frederick Muriuki Muriithi |
| 2023-09-26 | Update query...Replace `group_user_roles_on_resources` table with `user_roles` for
the query that checks whether the user has appropriate permissions to
act on a specific resource.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Handle AuthorisationError at the top-level...Add an error handler to gracefully handle the custom
AuthorisationError at the application's top-level to avoid having to
manually handle it everywhere that the error (and its sub-classes)
might be raised.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Handle temporary edge cases...Fetching resource data: system and group categories of resources do
not have associated genetic data.
This commit adds some code to temporarily handle that case as an edge
case before I can devote more time to fixing the issue in a much
better way.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Add `public-view` role. Assign it to users....Add a new `public-view` role to be assigned to all users on all
resources that are defined as publicly viewable.
Update code to make assign `public-view` role to a newly registered
user for all publicly viewable roles.
Update the code to assign/revoke the `public-view` role to/from users
whenever the resource is toggled to and from being publicly viewable.
Ensure that `public-view` is not revoked from system-administrators.
Ensure that `public-view` is not revoked from the group administrators
of the group that owns the resource.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Update fetching a single role | Frederick Muriuki Muriithi |
| 2023-09-26 | Initialise package to handle resources of type "system". | Frederick Muriuki Muriithi |
| 2023-09-26 | Update /roles endpoint: rework code for new `user_roles` function...The way the `gn_auth.auth.authorisation.roles.models.user_roles`
function works has changed: this commit updates the code to take that
into consideration and fix any errors.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Add default `REDIS_URI` configuration. | Frederick Muriuki Muriithi |
| 2023-09-26 | Add System resource, and group resource(s) to list of user resources...* The system resource is public, and should be present for all users.
* Each user that is a member of a group, should have their group show
up in their list of resources.
* Fix the SQL join: add an `ON ...` clause.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Update `user_roles`: Return roles for user by resource. | Frederick Muriuki Muriithi |
| 2023-09-26 | Move `groups` package under `resources` package...With user groups being resources that users can act on (with the
recent changes), this commit moves the `groups` module to under the
`resources` module.
It also renames the `*_resources.py` modules by dropping the
`_resources` part since the code is under the `resources` module
anyway.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Update tests & fixtures to conform to schema changes | Frederick Muriuki Muriithi |
| 2023-09-26 | Remove group from resource objects...With the new schema, not all Resource objects are "owned" by a
group. Those that are, are linked together through a different db
table (`resource_ownership`).
This commit removes the `Group` object from `Resource` objects and
updates the `resource_ownership` where relevant.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Raise exception if no group for `resource_group`...Rather than using pymonad's Maybe monad and dealing with the
complexity it introduces, raise an exception if there is no group
found for the given resource.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Add `resource_group` function to retrieve the owning group...Some resources are "owned" by specific user groups. This commit adds a
way to retrieve those "owners" where relevant.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Extract resource-type-specific code into separate modules...For easier maintenance, extract the code that relates to specific
resource types/categories into separate modules, each dealing with a
single resource type/category.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Extract basic resource types to a separate module. | Frederick Muriuki Muriithi |
| 2023-09-26 | Fix foreign-key refs. Merge tables....* Link the `role_id` field to the `roles` table rather than the
`group_roles` table.
* Merge the data in the `group_user_roles_on_resources` table in the
`user_roles` table to have a single point-of-truth for all user
roles on resources.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Add a 'system' resource...Add a 'system' resource to allow users to have roles they can use to
act on the system itself.
| Frederick Muriuki Muriithi |
| 2023-09-26 | migrations: Create `group_resources` table. | Frederick Muriuki Muriithi |
| 2023-09-26 | Drop `group_id` from resources table...Drop the `group_id` from the `resources` table and update all
dependent tables to fix FOREIGN KEY constraints to ensure integrity of
the data.
| Frederick Muriuki Muriithi |
| 2023-09-26 | Add `system` and `group` resource categories. | Frederick Muriuki Muriithi |
| 2023-09-26 | Resources refactor: Add `resource_ownership` table...New table to link resources to groups, where relevant.
| Frederick Muriuki Muriithi |
