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-rw-r--r--tests/unit/auth/fixtures/group_fixtures.py52
-rw-r--r--tests/unit/auth/fixtures/resource_fixtures.py30
-rw-r--r--tests/unit/auth/fixtures/user_fixtures.py34
3 files changed, 90 insertions, 26 deletions
diff --git a/tests/unit/auth/fixtures/group_fixtures.py b/tests/unit/auth/fixtures/group_fixtures.py
index c7775d9..8a4e79b 100644
--- a/tests/unit/auth/fixtures/group_fixtures.py
+++ b/tests/unit/auth/fixtures/group_fixtures.py
@@ -15,30 +15,42 @@ TEST_GROUP_02 = Group(uuid.UUID("e37d59d7-c05e-4d67-b479-81e627d8d634"),
"AnotherTestGroup", {})
TEST_GROUPS = (TEST_GROUP_01, TEST_GROUP_02)
+GROUP_CATEGORY = ResourceCategory(
+ uuid.UUID("1e0f70ee-add5-4358-8c6c-43de77fa4cce"),
+ "group",
+ "A group resource.")
+GROUPS_AS_RESOURCES = tuple({
+ "group_id": str(group.group_id),
+ "resource_id": str(uuid.uuid4()),
+ "resource_name": group.group_name,
+ "category_id": str(GROUP_CATEGORY.resource_category_id),
+ "public": "1"
+} for group in TEST_GROUPS)
+
TEST_RESOURCES_GROUP_01 = (
- Resource(TEST_GROUPS[0], uuid.UUID("26ad1668-29f5-439d-b905-84d551f85955"),
+ Resource(uuid.UUID("26ad1668-29f5-439d-b905-84d551f85955"),
"ResourceG01R01",
ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
"genotype", "Genotype Dataset"),
True),
- Resource(TEST_GROUPS[0], uuid.UUID("2130aec0-fefd-434d-92fd-9ca342348b2d"),
+ Resource(uuid.UUID("2130aec0-fefd-434d-92fd-9ca342348b2d"),
"ResourceG01R02",
ResourceCategory(uuid.UUID("548d684b-d4d1-46fb-a6d3-51a56b7da1b3"),
"phenotype", "Phenotype (Publish) Dataset"),
False),
- Resource(TEST_GROUPS[0], uuid.UUID("e9a1184a-e8b4-49fb-b713-8d9cbeea5b83"),
+ Resource(uuid.UUID("e9a1184a-e8b4-49fb-b713-8d9cbeea5b83"),
"ResourceG01R03",
ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
"mrna", "mRNA Dataset"),
False))
TEST_RESOURCES_GROUP_02 = (
- Resource(TEST_GROUPS[1], uuid.UUID("14496a1c-c234-49a2-978c-8859ea274054"),
+ Resource(uuid.UUID("14496a1c-c234-49a2-978c-8859ea274054"),
"ResourceG02R01",
ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
"genotype", "Genotype Dataset"),
False),
- Resource(TEST_GROUPS[1], uuid.UUID("04ad9e09-94ea-4390-8a02-11f92999806b"),
+ Resource(uuid.UUID("04ad9e09-94ea-4390-8a02-11f92999806b"),
"ResourceG02R02",
ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
"mrna", "mRNA Dataset"),
@@ -53,16 +65,32 @@ def __gtuple__(cursor):
@pytest.fixture(scope="function")
def fxtr_group(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name]
"""Fixture: setup a test group."""
- query = "INSERT INTO groups(group_id, group_name) VALUES (?, ?)"
with db.cursor(conn_after_auth_migrations) as cursor:
cursor.executemany(
- query, tuple(
+ "INSERT INTO groups(group_id, group_name) VALUES (?, ?)",
+ tuple(
(str(group.group_id), group.group_name)
for group in TEST_GROUPS))
+ cursor.executemany(
+ "INSERT INTO resources "
+ "VALUES(:resource_id, :resource_name, :category_id, :public)",
+ GROUPS_AS_RESOURCES)
+
+ cursor.executemany(
+ "INSERT INTO group_resources(resource_id, group_id) "
+ "VALUES(:resource_id, :group_id)",
+ GROUPS_AS_RESOURCES)
+
yield (conn_after_auth_migrations, TEST_GROUPS[0])
with db.cursor(conn_after_auth_migrations) as cursor:
+ resource_id_params = tuple(
+ (str(res["resource_id"]),) for res in GROUPS_AS_RESOURCES)
+ cursor.executemany("DELETE FROM group_resources WHERE resource_id=?",
+ resource_id_params)
+ cursor.executemany("DELETE FROM resources WHERE resource_id=?",
+ resource_id_params)
cursor.executemany(
"DELETE FROM groups WHERE group_id=?",
((str(group.group_id),) for group in TEST_GROUPS))
@@ -106,7 +134,6 @@ def fxtr_group_roles(fxtr_group, fxtr_roles):# pylint: disable=[redefined-outer-
yield conn, groups, group_roles
with db.cursor(conn) as cursor:
- cursor.execute("SELECT * FROM group_user_roles_on_resources")
cursor.executemany(
("DELETE FROM group_roles "
"WHERE group_role_id=? AND group_id=? AND role_id=?"),
@@ -127,21 +154,20 @@ def fxtr_group_user_roles(fxtr_resources, fxtr_group_roles, fxtr_users_in_group)
for user in users if user.email == "group@mem.ber01")
with db.cursor(conn) as cursor:
params = tuple({
- "group_id": str(resource.group.group_id),
"user_id": str(user.user_id),
"role_id": str(role.role_id),
"resource_id": str(resource.resource_id)
} for user, role, resource in users_roles_resources)
cursor.executemany(
- ("INSERT INTO group_user_roles_on_resources "
- "VALUES (:group_id, :user_id, :role_id, :resource_id)"),
+ ("INSERT INTO user_roles "
+ "VALUES (:user_id, :role_id, :resource_id)"),
params)
yield conn, group_users, group_roles, group_resources
with db.cursor(conn) as cursor:
cursor.executemany(
- ("DELETE FROM group_user_roles_on_resources WHERE "
- "group_id=:group_id AND user_id=:user_id AND role_id=:role_id AND "
+ ("DELETE FROM user_roles WHERE "
+ "user_id=:user_id AND role_id=:role_id AND "
"resource_id=:resource_id"),
params)
diff --git a/tests/unit/auth/fixtures/resource_fixtures.py b/tests/unit/auth/fixtures/resource_fixtures.py
index af22733..7f3c383 100644
--- a/tests/unit/auth/fixtures/resource_fixtures.py
+++ b/tests/unit/auth/fixtures/resource_fixtures.py
@@ -3,23 +3,43 @@ import pytest
from gn_auth.auth.db import sqlite3 as db
-from .group_fixtures import TEST_RESOURCES
+from .group_fixtures import (
+ TEST_RESOURCES,
+ TEST_GROUP_01,
+ TEST_GROUP_02,
+ TEST_RESOURCES_GROUP_01,
+ TEST_RESOURCES_GROUP_02)
@pytest.fixture(scope="function")
def fxtr_resources(fxtr_group):# pylint: disable=[redefined-outer-name]
"""fixture: setup test resources in the database"""
conn, _group = fxtr_group
+ ownership = tuple({
+ "group_id": str(TEST_GROUP_01.group_id),
+ "resource_id": str(res.resource_id)
+ } for res in TEST_RESOURCES_GROUP_01) + tuple({
+ "group_id": str(TEST_GROUP_02.group_id),
+ "resource_id": str(res.resource_id)
+ } for res in TEST_RESOURCES_GROUP_02)
+
with db.cursor(conn) as cursor:
cursor.executemany(
- "INSERT INTO resources VALUES (?,?,?,?,?)",
- ((str(res.group.group_id), str(res.resource_id), res.resource_name,
+ "INSERT INTO resources VALUES (?,?,?,?)",
+ ((str(res.resource_id), res.resource_name,
str(res.resource_category.resource_category_id),
1 if res.public else 0) for res in TEST_RESOURCES))
+ cursor.executemany(
+ "INSERT INTO resource_ownership(group_id, resource_id) "
+ "VALUES (:group_id, :resource_id)",
+ ownership)
yield (conn, TEST_RESOURCES)
with db.cursor(conn) as cursor:
cursor.executemany(
- "DELETE FROM resources WHERE group_id=? AND resource_id=?",
- ((str(res.group.group_id), str(res.resource_id),)
+ "DELETE FROM resource_ownership "
+ "WHERE group_id=:group_id AND resource_id=:resource_id",
+ ownership)
+ cursor.executemany("DELETE FROM resources WHERE resource_id=?",
+ ((str(res.resource_id),)
for res in TEST_RESOURCES))
diff --git a/tests/unit/auth/fixtures/user_fixtures.py b/tests/unit/auth/fixtures/user_fixtures.py
index 531a321..b88d78a 100644
--- a/tests/unit/auth/fixtures/user_fixtures.py
+++ b/tests/unit/auth/fixtures/user_fixtures.py
@@ -6,6 +6,8 @@ import pytest
from gn_auth.auth.db import sqlite3 as db
from gn_auth.auth.authentication.users import User, hash_password
+from .group_fixtures import TEST_GROUP_01
+
TEST_USERS = (
User(uuid.UUID("ecb52977-3004-469e-9428-2a1856725c7f"), "group@lead.er",
"Group Leader"),
@@ -17,19 +19,35 @@ TEST_USERS = (
"unaff@iliated.user", "Unaffiliated User"))
@pytest.fixture(scope="function")
-def fxtr_users(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name]
+def fxtr_users(conn_after_auth_migrations, fxtr_group):# pylint: disable=[redefined-outer-name, unused-argument]
"""Fixture: setup test users."""
query = "INSERT INTO users(user_id, email, name) VALUES (?, ?, ?)"
- query_user_roles = "INSERT INTO user_roles(user_id, role_id) VALUES (?, ?)"
- test_user_roles = (
- ("ecb52977-3004-469e-9428-2a1856725c7f",
- "a0e67630-d502-4b9f-b23f-6805d0f30e30"),
- ("ecb52977-3004-469e-9428-2a1856725c7f",
- "ade7e6b0-ba9c-4b51-87d0-2af7fe39a347"))
with db.cursor(conn_after_auth_migrations) as cursor:
cursor.executemany(query, (
(str(user.user_id), user.email, user.name) for user in TEST_USERS))
- cursor.executemany(query_user_roles, test_user_roles)
+ # setup user roles
+ cursor.execute("SELECT * FROM group_resources")
+ g01res_id = {
+ row["group_id"]: row["resource_id"]
+ for row in cursor.fetchall()
+ }[str(TEST_GROUP_01.group_id)]
+ cursor.execute("SELECT * FROM resources WHERE resource_name='GeneNetwork System'")
+ sysres_id = cursor.fetchone()["resource_id"]
+ test_user_roles = (
+ {
+ "user_id": "ecb52977-3004-469e-9428-2a1856725c7f",
+ "role_id": "a0e67630-d502-4b9f-b23f-6805d0f30e30",# group-leader
+ "resource_id": g01res_id
+ },
+ {
+ "user_id": "ecb52977-3004-469e-9428-2a1856725c7f",
+ "role_id": "ade7e6b0-ba9c-4b51-87d0-2af7fe39a347",# group-creator
+ "resource_id": sysres_id
+ })
+ cursor.executemany(
+ "INSERT INTO user_roles(user_id, role_id, resource_id) "
+ "VALUES (:user_id, :role_id, :resource_id)",
+ test_user_roles)
yield (conn_after_auth_migrations, TEST_USERS)
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-25 20:52:21 +0000