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-rw-r--r--.guix/modules/guix-package.scm114
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-(define-module (genenetwork-auth)
- #:use-module (guix)
- #:use-module (guix git-download)
- #:use-module (guix build-system python)
- #:use-module ((guix licenses) #:prefix license:)
-
- #:use-module (git oid)
- #:use-module (git tag)
- #:use-module (git bindings)
- #:use-module (git reference)
- #:use-module (git repository)
-
-
- ;; Packages from guix
- #:use-module (gnu packages check)
-
- #:use-module (gnu packages python-web)
- #:use-module (gnu packages python-xyz)
- #:use-module (gnu packages python-check)
- #:use-module (gnu packages python-crypto)
-
- #:use-module (gnu packages databases)
-
-
- ;; Packages from guix-bioinformatics
- #:use-module (gn packages python-web))
-
-(define %source-dir (dirname (dirname (dirname (current-filename)))))
-
-(define (get-commit)
- "Retrieve the commit if the source directory is a repository."
- (if (git-predicate %source-dir)
- (begin (let ((commit #f))
- (libgit2-init!)
- (set! commit (oid->string
- (reference-target
- (repository-head (repository-open %source-dir)))))
- (libgit2-shutdown!)
- commit))
- "NOTAREPOSITORY"))
-
-(define (list-last lst)
- (let ((len (length lst)))
- (if (> len 0)
- (list-ref lst (- len 1)))))
-
-(define (process-version repo-head tag-vals)
- (let ((version-prefix (list-last (string-split (car tag-vals) #\/)))
- (repo-head-str (oid->string repo-head)))
- (if (zero? (oid-cmp repo-head
- (tag-target-id (cdr tag-vals))))
- version-prefix
- (string-append version-prefix "-" (substring repo-head-str 0 8)))))
-
-(define (get-latest-version)
- "Get latest version tag from repository."
- (let ((%repo #f)
- (%tags (list))
- (%repo-head #f))
- (begin (libgit2-init!)
- (set! %repo (repository-open %source-dir))
- (set! %repo-head (reference-target (repository-head %repo)))
- (tag-foreach %repo
- (lambda (tname tref)
- (set! %tags (list (cons tname (tag-lookup %repo tref))))
- 0))
- (libgit2-shutdown!)
- (if (zero? (length %tags))
- (string-append "v0.0.0-" (substring (oid->string %repo-head) 0 8))
- (process-version
- %repo-head
- (list-last (sort-list %tags (lambda (item) (error item)))))))))
-
-(define vcs-file?
- (or (git-predicate %source-dir)
- (const #t)))
-
-(package
- (name "genenetwork-auth")
- (version (string-append (get-latest-version)
- "-git-"
- (substring (get-commit) 0 9)))
- (source (local-file %source-dir "genenetwork-auth-checkout"
- #:recursive? #t
- #:select? vcs-file?))
- (build-system python-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda _ (invoke "pytest" "-k" "unit_test"))))))
- ;; (inputs (list))
- (native-inputs
- (list python-mypy
- python-pytest
- python-pylint
- python-hypothesis
- python-pytest-mock
- python-mypy-extensions))
- (propagated-inputs
- (list python-flask
- python-redis
- python-authlib
- python-pymonad
- yoyo-migrations
- python-bcrypt ;; remove after removing all references
- python-mysqlclient
- python-argon2-cffi
- python-email-validator))
- (home-page "https://github.com/genenetwork/gn-auth")
- (synopsis "Authentication and Authorisation server for GeneNetwork services.")
- (description "Authentication and Authorisation server for GeneNetwork services.")
- (license license:agpl3+))