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authorFrederick Muriuki Muriithi2023-08-04 10:10:28 +0300
committerFrederick Muriuki Muriithi2023-08-04 10:20:09 +0300
commit8b7c598407a5fea9a3d78473e72df87606998cd4 (patch)
tree8526433a17eca6b511feb082a0574f9b15cb9469 /migrations/auth/20230410_01_8mwaf-create-linked-mrna-data-table.py
parentf7fcbbcc014686ac597b783a8dcb38b43024b9d6 (diff)
downloadgn-auth-8b7c598407a5fea9a3d78473e72df87606998cd4.tar.gz
Copy over files from GN3 repository.
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+"""
+Create linked mrna data table
+"""
+
+from yoyo import step
+
+__depends__ = {'20230404_02_la33P-create-genotype-resources-table'}
+
+steps = [
+ step(
+ """
+ CREATE TABLE IF NOT EXISTS linked_mrna_data
+ -- Link mRNA Assay data in MariaDB to user groups in auth system
+ (
+ data_link_id TEXT NOT NULL PRIMARY KEY, -- A new ID for the auth system
+ group_id TEXT NOT NULL, -- The user group the data is linked to
+ SpeciesId TEXT NOT NULL, -- The species in MariaDB
+ InbredSetId TEXT NOT NULL, -- The traits group in MariaDB
+ ProbeFreezeId TEXT NOT NULL, -- The study ID in MariaDB
+ ProbeSetFreezeId TEXT NOT NULL, -- The dataset Id in MariaDB
+ dataset_name TEXT, -- dataset Name in MariaDB
+ dataset_fullname, -- dataset FullName in MariaDB
+ dataset_shortname, -- dataset ShortName in MariaDB
+ FOREIGN KEY (group_id)
+ REFERENCES groups(group_id) ON UPDATE CASCADE ON DELETE RESTRICT
+ UNIQUE (SpeciesId, InbredSetId, ProbeFreezeId, ProbeSetFreezeId)
+ ) WITHOUT ROWID
+ """,
+ "DROP TABLE IF EXISTS linked_mrna_data")
+]