Move `groups` package under `resources` package

With user groups being resources that users can act on (with the
recent changes), this commit moves the `groups` module to under the
`resources` module.

It also renames the `*_resources.py` modules by dropping the
`_resources` part since the code is under the `resources` module
anyway.

1 files changed, 0 insertions, 71 deletions

diff --git a/gn_auth/auth/authorisation/resources/phenotype_resource.py b/gn_auth/auth/authorisation/resources/phenotype_resource.py
deleted file mode 100644
index 046357c..0000000
--- a/gn_auth/auth/authorisation/resources/phenotype_resource.py
+++ /dev/null
@@ -1,71 +0,0 @@
-"""Phenotype data resources functions and utilities."""
-import uuid
-from typing import Optional, Sequence
-
-import sqlite3
-
-import gn_auth.auth.db.sqlite3 as db
-from gn_auth.auth.authorisation.groups import Group
-
-from .base import Resource
-from .data import __attach_data__
-
-def resource_data(
-        cursor: db.DbCursor,
-        resource_id: uuid.UUID,
-        offset: int = 0,
-        limit: Optional[int] = None) -> Sequence[sqlite3.Row]:
-    """Fetch data linked to a Phenotype resource"""
-    cursor.execute(
-        ("SELECT * FROM phenotype_resources AS pr "
-         "INNER JOIN linked_phenotype_data AS lpd "
-         "ON pr.data_link_id=lpd.data_link_id "
-         "WHERE pr.resource_id=?") + (
-             f" LIMIT {limit} OFFSET {offset}" if bool(limit) else ""),
-        (str(resource_id),))
-    return cursor.fetchall()
-
-def link_data_to_resource(
-        conn: db.DbConnection,
-        resource: Resource,
-        group: Group,
-        data_link_id: uuid.UUID) -> dict:
-    """Link Phenotype data with a resource."""
-    with db.cursor(conn) as cursor:
-        params = {
-            "group_id": str(group.group_id),
-            "resource_id": str(resource.resource_id),
-            "data_link_id": str(data_link_id)
-        }
-        cursor.execute(
-            "INSERT INTO phenotype_resources VALUES"
-            "(:group_id, :resource_id, :data_link_id)",
-            params)
-        return params
-
-def unlink_data_from_resource(
-        conn: db.DbConnection,
-        resource: Resource,
-        data_link_id: uuid.UUID) -> dict:
-    """Unlink data from Phenotype resources"""
-    with db.cursor(conn) as cursor:
-        cursor.execute("DELETE FROM phenotype_resources "
-                       "WHERE resource_id=? AND data_link_id=?",
-                       (str(resource.resource_id), str(data_link_id)))
-        return {
-            "resource_id": str(resource.resource_id),
-            "dataset_type": resource.resource_category.resource_category_key,
-            "data_link_id": str(data_link_id)
-        }
-
-def attach_resources_data(
-        cursor, resources: Sequence[Resource]) -> Sequence[Resource]:
-    """Attach linked data to Phenotype resources"""
-    placeholders = ", ".join(["?"] * len(resources))
-    cursor.execute(
-        "SELECT * FROM phenotype_resources AS pr "
-        "INNER JOIN linked_phenotype_data AS lpd "
-        "ON pr.data_link_id=lpd.data_link_id "
-        f"WHERE pr.resource_id IN ({placeholders})",
-        tuple(str(resource.resource_id) for resource in resources))
-    return __attach_data__(cursor.fetchall(), resources)