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authorFrederick Muriuki Muriithi2023-09-14 12:06:23 +0300
committerFrederick Muriuki Muriithi2023-09-26 03:44:30 +0300
commite19b01571ce61e01f482a1dadeeb2fd835fda939 (patch)
tree27b8c7f86313a86bc1e6705ac65ff5996403eace /gn_auth/auth/authorisation/data
parent345e33fc8e1b12dda6626307ebac7e1206200974 (diff)
downloadgn-auth-e19b01571ce61e01f482a1dadeeb2fd835fda939.tar.gz
Move `groups` package under `resources` package
With user groups being resources that users can act on (with the recent changes), this commit moves the `groups` module to under the `resources` module. It also renames the `*_resources.py` modules by dropping the `_resources` part since the code is under the `resources` module anyway.
Diffstat (limited to 'gn_auth/auth/authorisation/data')
-rw-r--r--gn_auth/auth/authorisation/data/genotypes.py10
-rw-r--r--gn_auth/auth/authorisation/data/mrna.py10
-rw-r--r--gn_auth/auth/authorisation/data/phenotypes.py11
-rw-r--r--gn_auth/auth/authorisation/data/views.py4
4 files changed, 17 insertions, 18 deletions
diff --git a/gn_auth/auth/authorisation/data/genotypes.py b/gn_auth/auth/authorisation/data/genotypes.py
index 818f72d..bfddfc1 100644
--- a/gn_auth/auth/authorisation/data/genotypes.py
+++ b/gn_auth/auth/authorisation/data/genotypes.py
@@ -4,12 +4,12 @@ from typing import Iterable
from MySQLdb.cursors import DictCursor
-from ..checks import authorised_p
-from ..groups.models import Group
+from gn_auth.auth.dictify import dictify
+from gn_auth.auth.db import mariadb as gn3db
+from gn_auth.auth.db import sqlite3 as authdb
-from ...dictify import dictify
-from ...db import mariadb as gn3db
-from ...db import sqlite3 as authdb
+from gn_auth.auth.authorisation.checks import authorised_p
+from gn_auth.auth.authorisation.resources.groups.models import Group
def linked_genotype_data(conn: authdb.DbConnection) -> Iterable[dict]:
"""Retrive genotype data that is linked to user groups."""
diff --git a/gn_auth/auth/authorisation/data/mrna.py b/gn_auth/auth/authorisation/data/mrna.py
index 53f9bf9..edcd29e 100644
--- a/gn_auth/auth/authorisation/data/mrna.py
+++ b/gn_auth/auth/authorisation/data/mrna.py
@@ -3,12 +3,12 @@ import uuid
from typing import Iterable
from MySQLdb.cursors import DictCursor
-from ..checks import authorised_p
-from ..groups.models import Group
+from gn_auth.auth.dictify import dictify
+from gn_auth.auth.db import sqlite3 as authdb
+from gn_auth.auth.db import mariadb as gn3db
-from ...dictify import dictify
-from ...db import sqlite3 as authdb
-from ...db import mariadb as gn3db
+from gn_auth.auth.authorisation.checks import authorised_p
+from gn_auth.auth.authorisation.resources.groups.models import Group
def linked_mrna_data(conn: authdb.DbConnection) -> Iterable[dict]:
"""Retrieve mRNA Assay data that is linked to user groups."""
diff --git a/gn_auth/auth/authorisation/data/phenotypes.py b/gn_auth/auth/authorisation/data/phenotypes.py
index 84fc089..17555ec 100644
--- a/gn_auth/auth/authorisation/data/phenotypes.py
+++ b/gn_auth/auth/authorisation/data/phenotypes.py
@@ -4,13 +4,12 @@ from typing import Any, Iterable
from MySQLdb.cursors import DictCursor
+from gn_auth.auth.dictify import dictify
+from gn_auth.auth.db import sqlite3 as authdb
+from gn_auth.auth.db import mariadb as gn3db
-from ..checks import authorised_p
-from ..groups.models import Group
-
-from ...dictify import dictify
-from ...db import sqlite3 as authdb
-from ...db import mariadb as gn3db
+from gn_auth.auth.authorisation.checks import authorised_p
+from gn_auth.auth.authorisation.resources.groups.models import Group
def linked_phenotype_data(
authconn: authdb.DbConnection, gn3conn: gn3db.DbConnection,
diff --git a/gn_auth/auth/authorisation/data/views.py b/gn_auth/auth/authorisation/data/views.py
index 3c49ae5..a674ab4 100644
--- a/gn_auth/auth/authorisation/data/views.py
+++ b/gn_auth/auth/authorisation/data/views.py
@@ -13,6 +13,8 @@ from flask import request, jsonify, Response, Blueprint, current_app as app
from gn_auth import jobs
from gn_auth.commands import run_async_cmd
+from gn_auth.auth.authorisation.resources.groups.models import group_by_id
+
from ...db import sqlite3 as db
from ...db import mariadb as gn3db
from ...db.sqlite3 import with_db_connection
@@ -20,8 +22,6 @@ from ...db.sqlite3 import with_db_connection
from ..checks import require_json
from ..errors import InvalidData, NotFoundError
-from ..groups.models import group_by_id
-
from ..users.models import user_resource_roles
from ..resources.checks import authorised_for