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| author | Alexander_Kabui | 2025-10-15 18:28:36 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2025-10-15 18:30:16 +0300 |
| commit | ea92f55d34f0aba59be754c1dc7f2dae6574a7a9 (patch) | |
| tree | b2263f57885a2295dac6d8ab59259a57276d15ff | |
| parent | d46a53de3b759fce31258bb97ce5db20870eca1d (diff) | |
| download | gn-ai-ea92f55d34f0aba59be754c1dc7f2dae6574a7a9.tar.gz | |
feat: Update alexm tasks.
| -rw-r--r-- | tasks/alexm.gmi | 22 |
1 files changed, 14 insertions, 8 deletions
diff --git a/tasks/alexm.gmi b/tasks/alexm.gmi index 8ab86ff7..e4100463 100644 --- a/tasks/alexm.gmi +++ b/tasks/alexm.gmi @@ -128,21 +128,21 @@ e ## 11/8/2025 -* [-] integrating lmdb genotypes for rqtl2 computation for BXD +* [x] integrating lmdb genotypes for rqtl2 computation for BXD ## 18/8/2025 -* [-] integrating lmdb genotypes for rqtl2 computation for BXD +* [x] integrating lmdb genotypes for rqtl2 computation for BXD ## 25/8/2025 -* [-] script to dump phenotypes and cross metadata to lmdb +* [x] script to dump phenotypes and cross metadata to lmdb ## 31/8/2025 -* [] generic script that can parse json cross files and dump the metadata to lmdb -* [] follow up on dumped phenotypes in LMDB for GeneNetwork cc @bons -* [] integrating lmdb rqtl2 adapter to CD (test this on cd for bxd.) +* [x] generic script that can parse json cross files and dump the metadata to lmdb +* [x] follow up on dumped phenotypes in LMDB for GeneNetwork cc @bons +* [x] integrating lmdb rqtl2 adapter to CD (test this on cd for bxd.) ## 23/9/2025 * [x] dumping phenotypes to lmdb (BXDPublish) @@ -155,8 +155,14 @@ e ## 7/9/2025 -* [] integrate rqtl2-lmdb adapter to CD cc @bons with directory setup. -* [] improvement on rqtl2-lmdb adapter script; add covariates supports. +* [-] integrate rqtl2-lmdb adapter to CD cc @bons with directory setup. +* [x] improvement on rqtl2-lmdb adapter script; add covariates supports. + + +## 15/9/2025 + +* [-] clone qtl2 repo and build rqtl2-lmdb package locally. +* [] package rqtl2-lmdb package to guix-bioinformatics. ## Next week(s) |