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| author | Munyoki Kilyungi | 2026-02-18 10:00:29 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2026-02-18 10:00:29 +0300 |
| commit | b4bf5174d65472aef8ee93fd6c0cdc9482c37a12 (patch) | |
| tree | b708bfbfc3ac7e00477af0d2c1536c5e0f3b5184 | |
| parent | 4773352447e9cf5442dad226c53611f3583e714a (diff) | |
| download | gn-ai-b4bf5174d65472aef8ee93fd6c0cdc9482c37a12.tar.gz | |
Update issue.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | issues/rdf/rdf-refinement.gmi | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/issues/rdf/rdf-refinement.gmi b/issues/rdf/rdf-refinement.gmi index beceec8e..68dae635 100644 --- a/issues/rdf/rdf-refinement.gmi +++ b/issues/rdf/rdf-refinement.gmi @@ -148,8 +148,8 @@ s.Name, i.Name, t.Name, psf.FullName; * [X] gn:set->gn:dataset (gnt:has_genotype_data) * [X] gn:dataset->set (gnt:has_strain) -* [-] (cancelled) LMDB Data ∀ traits: already have the geno files set-up. -* [-] (cancelled) gn:set->markers +* [~] (cancelled) LMDB Data ∀ traits: already have the geno files set-up. +* [~] (cancelled) gn:set->markers Markers that belong to more than one species: @@ -308,7 +308,7 @@ We can get away with tx'ing ProbeSet in one go. However, file size gets too bi * [X] Have chunked transforms of huge data. * [X] ProbeSetXRef -* [ ] (w/ Johannesm/pjotrp/rob) What columns to put into RDF. We have 72 rows ATM: +* [~] (w/ Johannesm/pjotrp/rob) What columns to put into RDF. We have 72 rows ATM: ``` MariaDB [db_webqtl]> SELECT COUNT(*) AS column_count @@ -322,7 +322,7 @@ MariaDB [db_webqtl]> SELECT COUNT(*) AS column_count +--------------+ 1 row in set (0.00 sec) ``` -* [ ] (w/ Alex) ProbeSetData +* [ ] (Alex) ProbeSetData * [X] RIF * [-] (cancelled) Gene Symbols * [X] Make, in gn-guile, probeset URLs resolvable E.g. https://rdf.genenetwork.org/v1/id/probeset100_9332324_MZ @@ -345,6 +345,6 @@ SELECT * FROM ProbeSetFreeze WHERE CreateTime < DATE_SUB(CURDATE(), INTERVAL 5 Y ``` * [ ] Improve tx times for very large data. * [ ] (w/Alex) Revisit data privacy in the LMDB view. -* [-] (Cancelled) Re-visit how we store all HTML metadata. Clean this up. +* [~] (Cancelled) Re-visit how we store all HTML metadata. Clean this up. * [ ] Sync mariadb tux01 with tux02; have rdf.genenetwork.org be the latest. * [X] Make sure that the rdf.genenetwork.org named graph is available on public end-point (mention to Fred about the nuance of moving to a new graph without breaking CD/Prod from old code that used the old genenetwork.org graph). |