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| author | Munyoki Kilyungi | 2026-02-18 10:54:46 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2026-02-18 10:54:46 +0300 |
| commit | 86f060fbbc369e7a0c0c3602188bb0dbfd84b31e (patch) | |
| tree | d57433c25dd2e1fab54c6d1b5ae2662f65f5d14f | |
| parent | b4bf5174d65472aef8ee93fd6c0cdc9482c37a12 (diff) | |
| download | gn-ai-86f060fbbc369e7a0c0c3602188bb0dbfd84b31e.tar.gz | |
Update issue.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | issues/rdf/expose-lmdb-view-in-rdf.gmi | 15 |
1 files changed, 11 insertions, 4 deletions
diff --git a/issues/rdf/expose-lmdb-view-in-rdf.gmi b/issues/rdf/expose-lmdb-view-in-rdf.gmi index 6be06b2e..b2917de2 100644 --- a/issues/rdf/expose-lmdb-view-in-rdf.gmi +++ b/issues/rdf/expose-lmdb-view-in-rdf.gmi @@ -14,7 +14,7 @@ Related PR on older work: => https://github.com/genenetwork/genenetwork3/pull/235/changes#diff-78594d414ca0a54ae60255c1c869ce6cf52cfea18569b81f7d6fd3949135a860 -* [ ] (bonfacem, alexm) Copy over LMDB files in CD container for LMDB access to work. +* [X] (bonfacem, alexm) Copy over LMDB files in CD container for LMDB access to work. ## Phenotypes strains Example query to fetch BXD_10007: @@ -86,9 +86,9 @@ curl http://127.0.0.1:8091/dataset/bxd-publish/values/10002.json TODO ## Post Mark-up -* [ ] Add g-exp scripts for generating all the data. -* [ ] Figure out how to add geno-files (or the lmdb view) to RDF. -* [ ] Replace naming scheme to use new GN RDF naming convention. See: +* [ ] (bonfacem) Add g-exp scripts for generating all the data. +* [ ] (alexm) Figure out how to add geno-files (or the lmdb view) to RDF. +* [X] Replace naming scheme to use new GN RDF naming convention. See: => https://issues.genenetwork.org/issues/rdf/rdf-refinement @@ -101,3 +101,10 @@ Old scheme, combine trait_id (PublishXRef) + Dataset Name (PublishFreeze.Name). New scheme should mimic: => https://rdf.genenetwork.org/v1/id/trait_BXDPublish_IOP_all_ages + +For probesets: + +``` +https://genenetwork.org/show_trait?trait_id=4304920&dataset=UMUTAffyExon_0209_RMA +gnd:UMUTAffyExon_0209_RMA_4304920.json +``` |