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| author | Munyoki Kilyungi | 2026-02-25 12:08:01 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2026-02-25 12:08:01 +0300 |
| commit | 1e4f2fe41304c4e179a830c7d66a4e693d68cbb1 (patch) | |
| tree | f0a09b1b1d60e3c4a82837de9eb9562158d9ed53 | |
| parent | c1e3a01f8b57b7752b30c03fab399c0e127ef897 (diff) | |
| download | gn-ai-1e4f2fe41304c4e179a830c7d66a4e693d68cbb1.tar.gz | |
Update issue.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | issues/ai/search.gmi | 23 |
1 files changed, 18 insertions, 5 deletions
diff --git a/issues/ai/search.gmi b/issues/ai/search.gmi index ad2b7890..070651c7 100644 --- a/issues/ai/search.gmi +++ b/issues/ai/search.gmi @@ -54,10 +54,23 @@ LIMIT 10; * [X] (johannesm, bonfacem) Package AI search so that it can be called from any GN code. Packaging done in PyPi. Minor fixes: bumped down python deps to 3.11 instead of 3.12. -* [ ] (bonfacem) Fix poetry build for (Munyoki's) local dev. -* [ ] (johannesm, ! bonfacem) Add REST API for processing answers from AI processing. -* [X] (pjotr) (WIP) Ask about DNS name to test out AI search in GN2/3; Note: Follow up later. -* [ ] (johannes, bonfacem) Do UI work to integrate above search in GN mainline. No auth (security: use secret keys, setting up auth - maybe - for later). +* [X] (bonfacem) Fix poetry build for (Munyoki's) local dev. See: +=> https://github.com/genenetwork/gn-ai/pull/1 +* [X] (johannesm, ! bonfacem) Add REST API for processing answers from AI processing. +=> https://github.com/genenetwork/gn-ai/pull/2 + +Example query over curl: +``` +curl "http://localhost:5000/api/v1/search?q=Does%20diabetes%20occur%20naturally%20in%20rats%3F" +curl "http://localhost:5000/api/v1/search?q=point%20me%20to%20useful%20phenotypes%20that%20cause%20ADHD%3F" +``` +* [X] (pjotr) Ask about DNS name to test out AI search in GN2/3; Note: Follow up later. +* [ ] (bonfacem, johannesm) Rewrite `rdf2partial_text.py` to query virtuoso. +* [ ] (bonfacem) Add cache layer for faster resp times for same questions. +* [ ] (bonfacem) Figure out bare-bones auth to make gn2 talk to gnais +* [ ] (johannesm, bonfacem) Build UI over above REST endpoints. +* [ ] Add Nginx blocks for AI search app. + ## Later (Genotypes/ Molecular Traits) * [ ] (johannesm, bonfacem) Extend / Modify (directly use sparql) corpus to molecular traits (later genotypes, precompute data and RIFs). @@ -326,4 +339,4 @@ AI search (GNAIS) can be loaded as a module in any GeneNetwork code and used, pr ## For Later (Nice To Haves) -* [ ] (bonfacem) Add package to guix-bioinformatics. Questions: langchain support? +* [~] (bonfacem) Add package to guix-bioinformatics. Questions: langchain support? Cancelled. Poor guix support for AI libraries. We work with pip+pyproject for now. |