blob: 3045f78cc09dd1eb25f130519dc0cd20fae722a4 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
|
"""test for biweight script"""
from unittest import TestCase
from unittest import mock
from gn3.computations.biweight import call_biweight_script
class TestBiweight(TestCase):
"""test class for biweight"""
@mock.patch("gn3.computations.biweight.subprocess.check_output")
def test_call_biweight_script(self, mock_check_output):
"""test for call_biweight_script func"""
mock_check_output.return_value = "0.1 0.5"
results = call_biweight_script(command="Rscript",
path_to_script="./r_script.R",
trait_vals=[
1.2, 1.1, 1.9],
target_vals=[1.9, 0.4, 1.1])
self.assertEqual(results, (0.1, 0.5))
|
