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"""Fixtures and utilities for group-related tests"""
import uuid
import pytest
from gn3.auth import db
from gn3.auth.authorisation.groups import Group, GroupRole
from gn3.auth.authorisation.resources import Resource, ResourceCategory
from .role_fixtures import RESOURCE_EDITOR_ROLE, RESOURCE_READER_ROLE
TEST_GROUP_01 = Group(uuid.UUID("9988c21d-f02f-4d45-8966-22c968ac2fbf"),
"TheTestGroup", {})
TEST_GROUP_02 = Group(uuid.UUID("e37d59d7-c05e-4d67-b479-81e627d8d634"),
"AnotherTestGroup", {})
TEST_GROUPS = (TEST_GROUP_01, TEST_GROUP_02)
TEST_RESOURCES_GROUP_01 = (
Resource(TEST_GROUPS[0], uuid.UUID("26ad1668-29f5-439d-b905-84d551f85955"),
"ResourceG01R01",
ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
"genotype", "Genotype Dataset"),
True),
Resource(TEST_GROUPS[0], uuid.UUID("2130aec0-fefd-434d-92fd-9ca342348b2d"),
"ResourceG01R02",
ResourceCategory(uuid.UUID("548d684b-d4d1-46fb-a6d3-51a56b7da1b3"),
"phenotype", "Phenotype (Publish) Dataset"),
False),
Resource(TEST_GROUPS[0], uuid.UUID("e9a1184a-e8b4-49fb-b713-8d9cbeea5b83"),
"ResourceG01R03",
ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
"mrna", "mRNA Dataset"),
False))
TEST_RESOURCES_GROUP_02 = (
Resource(TEST_GROUPS[1], uuid.UUID("14496a1c-c234-49a2-978c-8859ea274054"),
"ResourceG02R01",
ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
"genotype", "Genotype Dataset"),
False),
Resource(TEST_GROUPS[1], uuid.UUID("04ad9e09-94ea-4390-8a02-11f92999806b"),
"ResourceG02R02",
ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
"mrna", "mRNA Dataset"),
True))
TEST_RESOURCES = TEST_RESOURCES_GROUP_01 + TEST_RESOURCES_GROUP_02
TEST_RESOURCES_PUBLIC = (TEST_RESOURCES_GROUP_01[0], TEST_RESOURCES_GROUP_02[1])
def __gtuple__(cursor):
return tuple(dict(row) for row in cursor.fetchall())
@pytest.fixture(scope="function")
def fxtr_group(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name]
"""Fixture: setup a test group."""
query = "INSERT INTO groups(group_id, group_name) VALUES (?, ?)"
with db.cursor(conn_after_auth_migrations) as cursor:
cursor.executemany(
query, tuple(
(str(group.group_id), group.group_name)
for group in TEST_GROUPS))
yield (conn_after_auth_migrations, TEST_GROUPS[0])
with db.cursor(conn_after_auth_migrations) as cursor:
cursor.executemany(
"DELETE FROM groups WHERE group_id=?",
((str(group.group_id),) for group in TEST_GROUPS))
@pytest.fixture(scope="function")
def fxtr_users_in_group(fxtr_group, fxtr_users):# pylint: disable=[redefined-outer-name, unused-argument]
"""Link the users to the groups."""
conn, all_users = fxtr_users
users = tuple(
user for user in all_users if user.email not in ("unaff@iliated.user",))
query_params = tuple(
(str(TEST_GROUP_01.group_id), str(user.user_id)) for user in users)
with db.cursor(conn) as cursor:
cursor.executemany(
"INSERT INTO group_users(group_id, user_id) VALUES (?, ?)",
query_params)
yield (conn, TEST_GROUP_01, users)
with db.cursor(conn) as cursor:
cursor.executemany(
"DELETE FROM group_users WHERE group_id=? AND user_id=?",
query_params)
@pytest.fixture(scope="function")
def fxtr_group_roles(fxtr_group, fxtr_roles):# pylint: disable=[redefined-outer-name,unused-argument]
"""Link roles to group"""
group_roles = (
GroupRole(uuid.UUID("9c25efb2-b477-4918-a95c-9914770cbf4d"),
TEST_GROUP_01, RESOURCE_EDITOR_ROLE),
GroupRole(uuid.UUID("82aed039-fe2f-408c-ab1e-81cd1ba96630"),
TEST_GROUP_02, RESOURCE_READER_ROLE))
conn, groups = fxtr_group
with db.cursor(conn) as cursor:
cursor.executemany(
"INSERT INTO group_roles VALUES (?, ?, ?)",
((str(role.group_role_id), str(role.group.group_id),
str(role.role.role_id))
for role in group_roles))
yield conn, groups, group_roles
with db.cursor(conn) as cursor:
cursor.execute("SELECT * FROM group_user_roles_on_resources")
cursor.executemany(
("DELETE FROM group_roles "
"WHERE group_role_id=? AND group_id=? AND role_id=?"),
((str(role.group_role_id), str(role.group.group_id),
str(role.role.role_id))
for role in group_roles))
@pytest.fixture(scope="function")
def fxtr_group_user_roles(fxtr_resources, fxtr_group_roles, fxtr_users_in_group):#pylint: disable=[redefined-outer-name,unused-argument]
"""Assign roles to users."""
conn, _groups, group_roles = fxtr_group_roles
_conn, group_resources = fxtr_resources
_conn, _group, group_users = fxtr_users_in_group
users = tuple(user for user in group_users if user.email
not in ("unaff@iliated.user", "group@lead.er"))
users_roles_resources = (
(user, RESOURCE_EDITOR_ROLE, TEST_RESOURCES_GROUP_01[1])
for user in users if user.email == "group@mem.ber01")
with db.cursor(conn) as cursor:
params = tuple({
"group_id": str(resource.group.group_id),
"user_id": str(user.user_id),
"role_id": str(role.role_id),
"resource_id": str(resource.resource_id)
} for user, role, resource in users_roles_resources)
cursor.executemany(
("INSERT INTO group_user_roles_on_resources "
"VALUES (:group_id, :user_id, :role_id, :resource_id)"),
params)
yield conn, group_users, group_roles, group_resources
with db.cursor(conn) as cursor:
cursor.executemany(
("DELETE FROM group_user_roles_on_resources WHERE "
"group_id=:group_id AND user_id=:user_id AND role_id=:role_id AND "
"resource_id=:resource_id"),
params)
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