aboutsummaryrefslogtreecommitdiff
path: root/tests/integration/test_traits.py
blob: 426bdd75e05b1e0974df187bf22dcfc22c301d5e (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
"""module contains integration tests for trait endpoints"""
from unittest import TestCase
from unittest import mock

from gn3.app import create_app


class TraitIntegrationTest(TestCase):
    """class contains integration tests for\
    traits"""

    def setUp(self):
        self.app = create_app().test_client()

    @mock.patch("gn3.api.traits.fetch_trait")
    def test_create_trait(self, mock_fetch_trait):
        """test the endpoint for creating traits\
        endpoint requires trait name and dataset name"""

        trait_results = {
            "dataset": None,
            "trait_name": "1449593_at",
            "trait_data": {
                "BXD11": 8.464,
                "BXD12": 8.414,
                "BXD13": 8.753,
                "BXD15": 8.5,
                "BXD16": 8.832
            }

        }
        mock_fetch_trait.return_value = trait_results

        results = self.app.get(
            "/api/trait/1449593_at/HC_M2_0606_P", follow_redirects=True)

        trait_data = results.get_json()

        self.assertEqual(results.status_code, 200)
        self.assertEqual(trait_data, trait_results)

    @mock.patch("gn3.api.traits.get_trait_info_data")
    def test_retrieve_trait_info(self, mock_get_trait_info):
        """integration test for endpoints for retrieving\
        trait info expects the dataset of trait to have been
        created"""

        trait_post_data = {
            "trait": {"trait_name": ""},
            "trait_dataset": {"dataset_name": ""}
        }

        expected_api_results = {
            "description": "trait description",
            "chr": "",
            "locus": "",
            "mb": "",
            "abbreviation": "trait_abbreviation",
            "trait_display_name": "trait_name"

        }
        mock_get_trait_info.return_value = expected_api_results

        trait_info = self.app.post(
            "/api/trait/trait_info/144_at", json=trait_post_data, follow_redirects=True)

        trait_info_results = trait_info.get_json()

        self.assertEqual(trait_info.status_code, 200)
        self.assertEqual(trait_info_results, expected_api_results)