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"""module contains general helper functions """
from gn3.base.data_set import create_dataset
from gn3.base.trait import create_trait
from gn3.base.species import TheSpecies
def get_species_dataset_trait(self, start_vars):
"""function to get species dataset and trait"""
if "temp_trait" in list(start_vars.keys()):
if start_vars['temp_trait'] == "True":
self.dataset = create_dataset(
dataset_name="Temp", dataset_type="Temp", group_name=start_vars['group'])
else:
self.dataset = create_dataset(start_vars['dataset'])
else:
self.dataset = create_dataset(start_vars['dataset'])
self.species = TheSpecies(dataset=self.dataset)
self.this_trait = create_trait(dataset=self.dataset,
name=start_vars['trait_id'],
cellid=None,
get_qtl_info=True)
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