blob: 56ddabaff2fad7462ef18cf894a71a919781835f (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
"""Configuration settings for this project"""
import tempfile
import os
BCRYPT_SALT = "$2b$12$mxLvu9XRLlIaaSeDxt8Sle" # Change this!
DATA_DIR = ""
GEMMA_WRAPPER_CMD = os.environ.get("GEMMA_WRAPPER", "gemma-wrapper")
RQTL_WRAPPER_CMD = os.environ.get("RQTL_WRAPPER")
CACHEDIR = ""
REDIS_URI = "redis://localhost:6379/0"
REDIS_JOB_QUEUE = "GN3::job-queue"
TMPDIR = os.environ.get("TMPDIR", tempfile.gettempdir())
RQTL_WRAPPER = "rqtl_wrapper.R"
# SQL confs
SQL_URI = os.environ.get(
"SQL_URI", "mysql://webqtlout:webqtlout@localhost/db_webqtl")
SECRET_KEY = "password"
SQLALCHEMY_TRACK_MODIFICATIONS = False
# gn2 results only used in fetching dataset info
GN2_BASE_URL = "http://www.genenetwork.org/"
# biweight script
BIWEIGHT_RSCRIPT = "~/genenetwork3/scripts/calculate_biweight.R"
# wgcna script
WGCNA_RSCRIPT = "wgcna_analysis.R"
# qtlreaper command
REAPER_COMMAND = "{}/bin/qtlreaper".format(os.environ.get("GUIX_ENVIRONMENT"))
# genotype files
GENOTYPE_FILES = os.environ.get(
"GENOTYPE_FILES", "{}/genotype_files/genotype".format(os.environ.get("HOME")))
# CROSS-ORIGIN SETUP
def parse_env_cors(default):
origins_str = os.environ.get("CORS_ORIGINS", None)
if origins_str:
return [
origin.strip() for origin in origins_str.split(",") if origin != ""]
return default
CORS_ORIGINS = parse_env_cors([
"http://localhost:*",
"http://127.0.0.1:*"
])
CORS_HEADERS = [
"Content-Type",
"Authorization",
"Access-Control-Allow-Credentials"
]
|
