blob: a08f846c54dd1841787108ac6369832c2a2458e7 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
|
"""Configuration settings for this project"""
import tempfile
import os
BCRYPT_SALT = "$2b$12$mxLvu9XRLlIaaSeDxt8Sle" # Change this!
DATA_DIR = ""
GEMMA_WRAPPER_CMD = os.environ.get("GEMMA_WRAPPER", "gemma-wrapper")
RQTL_WRAPPER_CMD = os.environ.get("RQTL_WRAPPER")
CACHEDIR = ""
REDIS_URI = "redis://localhost:6379/0"
REDIS_JOB_QUEUE = "GN3::job-queue"
TMPDIR = os.environ.get("TMPDIR", tempfile.gettempdir())
RQTL_WRAPPER = "rqtl_wrapper.R"
# SQL confs
SQL_URI = os.environ.get(
"SQL_URI", "mysql://webqtlout:webqtlout@localhost/db_webqtl")
SECRET_KEY = "password"
SQLALCHEMY_TRACK_MODIFICATIONS = False
# gn2 results only used in fetching dataset info
GN2_BASE_URL = "http://www.genenetwork.org/"
# biweight script
BIWEIGHT_RSCRIPT = "~/genenetwork3/scripts/calculate_biweight.R"
# qtlreaper command
REAPER_COMMAND = "{}/bin/qtlreaper".format(os.environ.get("GUIX_ENVIRONMENT"))
# genotype files
GENOTYPE_FILES = os.environ.get(
"GENOTYPE_FILES", "{}/genotype_files/genotype".format(os.environ.get("HOME")))
|
