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"""This contains all the necessary functions that are required to add traits
to the published database"""
from collections import namedtuple
from typing import Any
riset = namedtuple('riset', ['name', 'id'])
def get_riset(data_type: str, name: str, conn: Any):
query, _name, _id = None, None, None
if data_type == "Publish":
query = ("SELECT InbredSet.Name, InbredSet.Id FROM InbredSet, "
"PublishFreeze WHERE PublishFreeze.InbredSetId = "
"InbredSet.Id AND PublishFreeze.Name = '%s'" % name)
elif data_type == "Geno":
query = ("SELECT InbredSet.Name, InbredSet.Id FROM InbredSet, "
"GenoFreeze WHERE GenoFreeze.InbredSetId = "
"InbredSet.Id AND GenoFreeze.Name = '%s'" % name)
elif data_type == "ProbeSet":
query = ("SELECT InbredSet.Name, InbredSet.Id FROM "
"InbredSet, ProbeSetFreeze, ProbeFreeze WHERE "
"ProbeFreeze.InbredSetId = InbredSet.Id AND "
"ProbeFreeze.Id = ProbeSetFreeze.ProbeFreezeId AND "
"ProbeSetFreeze.Name = '%s'" % name)
if query:
with conn.cursor() as cursor:
_name, _id = cursor.fetchone()
if _name == "BXD300":
_name = "BXD"
return riset(_name, _id)
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