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"""Procedures related rqtl computations"""
from typing import Dict
from gn3.commands import compose_rqtl_cmd
from gn3.fs_helpers import get_hash_of_files
def generate_rqtl_cmd(rqtl_wrapper_cmd: str,
rqtl_wrapper_kwargs: Dict) -> Dict:
"""Given the base rqtl_wrapper command and
dict of keyword arguments, return the full rqtl_wrapper command and an
output filename generated from a hash of the genotype and phenotype files
"""
_hash = get_hash_of_files(
[v for k, v in rqtl_wrapper_kwargs.items() if k in ["g", "p"]])
_output_filename = f"{_hash}-output.json"
return {
"output_file":
_output_filename,
"rqtl_cmd":
compose_rqtl_cmd(rqtl_wrapper_cmd=rqtl_wrapper_cmd,
rqtl_wrapper_kwargs=rqtl_wrapper_kwargs)
}
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