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"""module contains code to process ctl analysis data"""
import json
from gn3.commands import run_cmd
from gn3.computations.wgcna import dump_wgcna_data
from gn3.computations.wgcna import compose_wgcna_cmd
def call_ctl_script(data):
"""function to call ctl script"""
temp_file_name = dump_wgcna_data(data)
cmd = compose_wgcna_cmd("ctl_analysis.R", temp_file_name)
try:
cmd_results = run_cmd(cmd)
print(cmd_results)
with open(temp_file_name,"r") as outputfile:
if cmd_results["code"] != 0:
return cmd_results
return json.load(outputfile)
except Exception as e:
return str(e)
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