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"""Endpoints for running the gemma cmd"""
from flask import Blueprint
from flask import current_app
from flask import jsonify
gemma = Blueprint("gemma", __name__)
from gn3.commands import run_cmd
@gemma.route("/")
def index() -> str:
"""Test endpoint"""
return jsonify(result="hello world")
@gemma.route("/version")
def get_version():
"""Display the installed version of gemma-wrapper"""
gemma_cmd = current_app.config['APP_DEFAULTS'].get('GEMMA_WRAPPER_CMD')
return jsonify(
run_cmd(f"{gemma_cmd} -v | head -n 1"))
@gemma.route("/k-compute/<token>", methods=["POST"])
def run_k_compute(token) -> str:
pass
@gemma.route("/lmm/gwa/<token>/<k_file_name>", methods=["POST"])
def run_gwa(token, k_file_name) -> str:
pass
@gemma.route("/pheno-permutation/<token>", methods=["POST"])
def run_pheno_permutation(token) -> str:
pass
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