From fd25b6bf205e4642cf5f6ba5ed0e0cad73efc0b6 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 3 Apr 2024 11:09:20 +0200
Subject: rqtl_wrapper: minor fixes

---
 tests/unit/test_commands.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'tests')

diff --git a/tests/unit/test_commands.py b/tests/unit/test_commands.py
index 4dd8735..de0918a 100644
--- a/tests/unit/test_commands.py
+++ b/tests/unit/test_commands.py
@@ -61,7 +61,7 @@ class TestCommands(unittest.TestCase):
     def test_compose_rqtl_cmd(self):
         """Test that the R/qtl cmd is composed correctly"""
         self.assertEqual(
-            compose_rqtl_cmd(rqtl_wrapper_cmd="rqtl-wrapper",
+            compose_rqtl_cmd(rqtl_wrapper_cmd="scripts/rqtl-wrapper",
                              rqtl_wrapper_kwargs={
                                  "g": "the_genofile",
                                  "p": "the_phenofile",
@@ -74,7 +74,7 @@ class TestCommands(unittest.TestCase):
                              rqtl_wrapper_bool_kwargs=[
                                  "addcovar"
                              ]),
-            ("Rscript rqtl-wrapper "
+            ("Rscript scripts/rqtl-wrapper "
              "--g the_genofile --p the_phenofile "
              "--model np --method ehk "
              "--nperm 2000 --scale Mb "
-- 
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