From 8478bc9ee572224fe3b76696de85d1c9a7a89399 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Wed, 10 Mar 2021 14:59:25 +0300
Subject: Fix k-compute command when "loco" is true

---
 tests/integration/test_gemma.py       | 6 +++---
 tests/unit/computations/test_gemma.py | 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

(limited to 'tests')

diff --git a/tests/integration/test_gemma.py b/tests/integration/test_gemma.py
index 7a7f520..73c7baa 100644
--- a/tests/integration/test_gemma.py
+++ b/tests/integration/test_gemma.py
@@ -110,7 +110,7 @@ class GemmaAPITest(unittest.TestCase):
             email=None,
             job_queue='GN3::job-queue',
             cmd=("gemma-wrapper --json --loco "
-                 "--input 1,2,3,4,5,6 -- "
+                 "1,2,3,4,5,6 -- "
                  "-g /tmp/test-data/genofile.txt "
                  "-p /tmp/test-data/phenofile.txt "
                  "-a /tmp/test-data/snpfile.txt "
@@ -435,7 +435,7 @@ class GemmaAPITest(unittest.TestCase):
             conn=_redis_conn,
             email=None,
             job_queue='GN3::job-queue',
-            cmd=("gemma-wrapper --json --loco --input 1,2,3,4 -- "
+            cmd=("gemma-wrapper --json --loco 1,2,3,4 -- "
                  "-g /tmp/my-token/genofile.txt "
                  "-p /tmp/my-token/phenofile.txt "
                  "-a /tmp/my-token/snpfile.txt "
@@ -490,7 +490,7 @@ class GemmaAPITest(unittest.TestCase):
             conn=_redis_conn,
             email=None,
             job_queue='GN3::job-queue',
-            cmd=("gemma-wrapper --json --loco --input 1,2,3,4 -- "
+            cmd=("gemma-wrapper --json --loco 1,2,3,4 -- "
                  "-g /tmp/my-token/genofile.txt "
                  "-p /tmp/my-token/phenofile.txt "
                  "-a /tmp/my-token/snpfile.txt "
diff --git a/tests/unit/computations/test_gemma.py b/tests/unit/computations/test_gemma.py
index f3b31e5..1081d12 100644
--- a/tests/unit/computations/test_gemma.py
+++ b/tests/unit/computations/test_gemma.py
@@ -69,7 +69,7 @@ class TestGemma(unittest.TestCase):
                                    "output_file":
                                    "my-hash-r+gF5a-output.json",
                                    "gemma_cmd": ("gemma-wrapper --json "
-                                                 "--loco --input 1,2,3,4,5 "
+                                                 "--loco 1,2,3,4,5 "
                                                  "-- -g genofile "
                                                  "-p phenofile -a snpsfile "
                                                  "-gk > /tmp/my-token/"
-- 
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