From 679a1af832ad9585c7cf72996043edb08e1b0d10 Mon Sep 17 00:00:00 2001
From: Muriithi Frederick Muriuki
Date: Mon, 6 Sep 2021 08:06:14 +0300
Subject: Leave "Chr" value as string when parsing

Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi

* The "Chr" value seems to be mostly a name of some sort, despite it being,
  seemingly an number. This commit parses the "Chr" value as a string.
  It also updates the tests to expec a string, rather than a number for "Chr"
  values.
---
 tests/unit/computations/test_qtlreaper.py | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

(limited to 'tests')

diff --git a/tests/unit/computations/test_qtlreaper.py b/tests/unit/computations/test_qtlreaper.py
index 6c3b64d..fd3434a 100644
--- a/tests/unit/computations/test_qtlreaper.py
+++ b/tests/unit/computations/test_qtlreaper.py
@@ -13,52 +13,52 @@ class TestQTLReaper(TestCase):
                 "tests/unit/computations/data/qtlreaper/main_output_sample.txt"),
             [
                 {
-                    "ID": "T1", "Locus": "rs31443144", "Chr": 1, "cM": 1.500,
+                    "ID": "T1", "Locus": "rs31443144", "Chr": "1", "cM": 1.500,
                     "Mb": 3.010, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs6269442", "Chr": 1, "cM": 1.500,
+                    "ID": "T1", "Locus": "rs6269442", "Chr": "1", "cM": 1.500,
                     "Mb": 3.492, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs32285189", "Chr": 1, "cM": 1.630,
+                    "ID": "T1", "Locus": "rs32285189", "Chr": "1", "cM": 1.630,
                     "Mb": 3.511, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs258367496", "Chr": 1, "cM": 1.630,
+                    "ID": "T1", "Locus": "rs258367496", "Chr": "1", "cM": 1.630,
                     "Mb": 3.660, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs32430919", "Chr": 1, "cM": 1.750,
+                    "ID": "T1", "Locus": "rs32430919", "Chr": "1", "cM": 1.750,
                     "Mb": 3.777, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs36251697", "Chr": 1, "cM": 1.880,
+                    "ID": "T1", "Locus": "rs36251697", "Chr": "1", "cM": 1.880,
                     "Mb": 3.812, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs30658298", "Chr": 1, "cM": 2.010,
+                    "ID": "T1", "Locus": "rs30658298", "Chr": "1", "cM": 2.010,
                     "Mb": 4.431, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs51852623", "Chr": 1, "cM": 2.010,
+                    "ID": "T1", "Locus": "rs51852623", "Chr": "1", "cM": 2.010,
                     "Mb": 4.447, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs31879829", "Chr": 1, "cM": 2.140,
+                    "ID": "T1", "Locus": "rs31879829", "Chr": "1", "cM": 2.140,
                     "Mb": 4.519, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 },
                 {
-                    "ID": "T1", "Locus": "rs36742481", "Chr": 1, "cM": 2.140,
+                    "ID": "T1", "Locus": "rs36742481", "Chr": "1", "cM": 2.140,
                     "Mb": 4.776, "LRS": 0.500, "Additive": -0.074,
                     "pValue": 1.000
                 }
-- 
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