From b5e1d1176f1bf4f7c0b68b27beb15e99418f1650 Mon Sep 17 00:00:00 2001 From: Muriithi Frederick Muriuki Date: Tue, 31 Aug 2021 11:16:29 +0300 Subject: Fix linting errors, minor bugs and reorganise code * Fix some linting errors and some minor bugs caught by the linter. Move the `random_string` function to separate module for use in multiple places in the code. --- tests/unit/computations/test_qtlreaper.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'tests/unit/computations') diff --git a/tests/unit/computations/test_qtlreaper.py b/tests/unit/computations/test_qtlreaper.py index ec23664..6c3b64d 100644 --- a/tests/unit/computations/test_qtlreaper.py +++ b/tests/unit/computations/test_qtlreaper.py @@ -1,5 +1,4 @@ """Module contains tests for gn3.computations.qtlreaper""" -import os from unittest import TestCase from gn3.computations.qtlreaper import ( parse_reaper_main_results, parse_reaper_permutation_results) @@ -8,6 +7,7 @@ class TestQTLReaper(TestCase): """Class for testing qtlreaper interface functions.""" def test_parse_reaper_main_results(self): + """Test that the main results file is parsed correctly.""" self.assertEqual( parse_reaper_main_results( "tests/unit/computations/data/qtlreaper/main_output_sample.txt"), @@ -65,9 +65,10 @@ class TestQTLReaper(TestCase): ]) def test_parse_reaper_permutation_results(self): + """Test that the permutations results file is parsed correctly.""" self.assertEqual( parse_reaper_permutation_results( - "tests/unit/computations/data/qtlreaper/permu_output_sample.txt"), + "tests/unit/computations/data/qtlreaper/permu_output_sample.txt"), [4.44174, 5.03825, 5.08167, 5.18119, 5.18578, 5.24563, 5.24619, 5.24619, 5.27961, 5.28228, 5.43903, 5.50188, 5.51694, 5.56830, 5.63874, 5.71346, 5.71936, 5.74275, 5.76764, 5.79815, 5.81671, -- cgit v1.2.3