From e66ca1919381261a0fcdb744d1fc12e8f51739d8 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Tue, 8 Nov 2022 20:30:44 +0000
Subject: Fix issue where only primary samples were used when all samples are
 selected

This is because base_samples was set to all_samples_ordered, which only
includes primary samples + parents/f1s. Setting this to an empty list
fixed the issue and caused it to use all samples again.
---
 gn3/computations/rust_correlation.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3')

diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py
index 644c73b..9595b57 100644
--- a/gn3/computations/rust_correlation.py
+++ b/gn3/computations/rust_correlation.py
@@ -144,7 +144,7 @@ def get_sample_corr_data(sample_type: str,
             excluded=dataset_samples)
     else:
         data = get_samples(
-            all_samples=sample_data, base_samples=all_samples, excluded=[])
+            all_samples=sample_data, base_samples=[], excluded=[])
     return data
 
 
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