From 8478bc9ee572224fe3b76696de85d1c9a7a89399 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Wed, 10 Mar 2021 14:59:25 +0300
Subject: Fix k-compute command when "loco" is true

---
 gn3/computations/gemma.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3')

diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py
index 172333c..5f9d5a3 100644
--- a/gn3/computations/gemma.py
+++ b/gn3/computations/gemma.py
@@ -59,7 +59,7 @@ def generate_gemma_cmd(gemma_cmd: str,
     _hash = get_hash_of_files(
         [v for k, v in gemma_kwargs.items() if k in ["g", "p", "a", "c"]])
     if chromosomes:  # Only reached when calculating k-values
-        gemma_wrapper_kwargs = {"loco": f"--input {chromosomes}"}
+        gemma_wrapper_kwargs = {"loco": f"{chromosomes}"}
         _hash += f"-{generate_hash_of_string(chromosomes)[:6]}"
     _output_filename = f"{_hash}-output.json"
     return {
-- 
cgit v1.2.3