From 56c73324c285d896567268370f3955bbd15754b0 Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Wed, 22 Sep 2021 09:02:46 +0300 Subject: Fix more pylint errors --- gn3/computations/qtlreaper.py | 3 ++- gn3/db/genotypes.py | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) (limited to 'gn3') diff --git a/gn3/computations/qtlreaper.py b/gn3/computations/qtlreaper.py index 5ddea76..8b2893e 100644 --- a/gn3/computations/qtlreaper.py +++ b/gn3/computations/qtlreaper.py @@ -74,7 +74,8 @@ def run_reaper( if separate_nperm_output: permu_output_filename: Union[None, str] = "{}/qtlreaper/permu_output_{}.txt".format( output_dir, random_string(10)) - output_list = output_list + ["--permu_output", permu_output_filename] # type: ignore[list-item] + output_list = output_list + [ + "--permu_output", permu_output_filename] # type: ignore[list-item] else: permu_output_filename = None diff --git a/gn3/db/genotypes.py b/gn3/db/genotypes.py index 9ea9f20..9987320 100644 --- a/gn3/db/genotypes.py +++ b/gn3/db/genotypes.py @@ -56,7 +56,7 @@ def __load_genotype_samples_from_geno(genotype_filename: str): continue break - headers = line.split("\t" ) # type: ignore[arg-type] + headers = line.split("\t") # type: ignore[arg-type] if headers[3] == "Mb": return headers[4:] return headers[3:] -- cgit 1.4.1