From 4dd2ab8da310a34e598553ef951d3233ded9d1ab Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 3 Apr 2024 13:28:49 +0200
Subject: Make sure dir exists before running R/qtl

---
 gn3/api/rqtl.py | 4 ++++
 1 file changed, 4 insertions(+)

(limited to 'gn3')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index dd9078f..68299d4 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -38,6 +38,10 @@ run the rqtl_wrapper script and return the results as JSON
             if kwarg in boolean_kwargs:
                 rqtl_bool_kwargs.append(kwarg)
 
+    outdir = os.path.join(get_tmpdir(),"gn3")
+    if not os.path.isdir(outdir):
+        os.mkdir(outdir)
+
     rqtl_cmd = generate_rqtl_cmd(
         rqtl_wrapper_cmd='scripts/rqtl_wrapper.R',
         rqtl_wrapper_kwargs=rqtl_kwargs,
-- 
cgit v1.2.3