From 3a0a7c1838beb528915e699292c6d3c01ef4cdc4 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 1 May 2023 19:32:16 +0000
Subject: Fix retrieve_sample_list function to correctly get genofile_path

---
 gn3/db/datasets.py | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

(limited to 'gn3')

diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py
index 9186875..48cd195 100644
--- a/gn3/db/datasets.py
+++ b/gn3/db/datasets.py
@@ -1,11 +1,10 @@
 """
 This module contains functions relating to specific trait dataset manipulation
 """
+import os
 from typing import Any
 
-
-def retrieve_sample_list(
-        group: str, connection: Any):
+def retrieve_sample_list(group: str):
     """
     Get the sample list for a group (a category that datasets belong to)
 
@@ -13,7 +12,7 @@ def retrieve_sample_list(
     the "official" sample list is stored
     """
 
-    genofile_path = current_app.config.get("RQTL_WRAPPER_CMD") + "/" + group + ".geno"
+    genofile_path = os.environ.get("GENENETWORK_FILES") + "/genotype/" + group + ".geno"
     if os.path.isfile(genofile_path):
         genofile = open(genofile_path)
 
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