From 28b0ced4ec13451c5c7323ed5135d126f296836a Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 29 Oct 2021 04:55:30 +0300
Subject: Move the function to computations module

Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi

* The function `batch_computed_tissue_correlation` is a pure computations
  function with no expressions accessing the database, as far as I can tell,
  therefore, this commit moves the function over to the
  gn3.computations.partial_correlations module that holds the pure computation
  functions.
---
 gn3/computations/partial_correlations.py | 8 ++++++++
 gn3/db/correlations.py                   | 8 --------
 2 files changed, 8 insertions(+), 8 deletions(-)

(limited to 'gn3')

diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py
index 1fb0ccc..b3de31c 100644
--- a/gn3/computations/partial_correlations.py
+++ b/gn3/computations/partial_correlations.py
@@ -122,3 +122,11 @@ def find_identical_traits(
                         (primary_name,) + control_names), {}).items()
                  if len(item[1]) > 1),
                 tuple()))
+
+def batch_computed_tissue_correlation(
+        trait_value: str, symbol_value_dict: dict,
+        method: str = "pearson") -> Tuple[dict, dict]:
+    """
+    `web.webqtl.correlation.correlationFunction.batchCalTissueCorr`"""
+    raise Exception("Not implemented!")
+    return ({}, {})
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py
index 54d3079..f43b8a5 100644
--- a/gn3/db/correlations.py
+++ b/gn3/db/correlations.py
@@ -281,14 +281,6 @@ def fetch_gene_symbol_tissue_value_dict_for_trait(
         return fetch_gene_symbol_tissue_value_dict(xref_info[0], xref_info[2], conn)
     return {}
 
-def batch_computed_tissue_correlation(
-        trait_value: str, symbol_value_dict: dict,
-        method: str = "pearson") -> Tuple[dict, dict]:
-    """
-    `web.webqtl.correlation.correlationFunction.batchCalTissueCorr`"""
-    raise Exception("Not implemented!")
-    return ({}, {})
-
 def correlations_of_all_tissue_traits(
         trait_symbol: str, probeset_freeze_id: int,
         method: str, conn: Any) -> Tuple[dict, dict]:
-- 
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