From d4d1a39c4aa302ee2a074da6fdf76a6fab91c267 Mon Sep 17 00:00:00 2001
From: Alexander_Kabui
Date: Thu, 21 Jul 2022 23:26:52 +0300
Subject: compute num overlap

---
 gn3/computations/rust_correlation.py | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

(limited to 'gn3/computations')

diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py
index 4438d79..086db3b 100644
--- a/gn3/computations/rust_correlation.py
+++ b/gn3/computations/rust_correlation.py
@@ -89,10 +89,9 @@ def parse_correlation_output(result_file: str, top_n: int = 500) -> list[dict]:
         lines = [next(file_reader) for x in range(top_n)]
 
         for line in lines:
-
-            (trait_name, corr_coeff, p_val) = line.rstrip().split(",")
+            (trait_name, corr_coeff, p_val, num_overlap) = line.rstrip().split(",")
             corr_data = {
-                "num_overlap": 00,  # to be later fixed
+                "num_overlap": num_overlap,
                 "corr_coefficient": corr_coeff,
                 "p_value": p_val
             }
@@ -169,3 +168,7 @@ def parse_tissue_corr_data(symbol_name: str,
                 pass
 
         return (x_vals, data)
+
+
+def parse_lit_corr_data(trait, dataset):
+    pass
-- 
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