From 4c73d70d6d844bf2fa3358c71b9e28daff51e69c Mon Sep 17 00:00:00 2001 From: Frederick Muriuki Muriithi Date: Fri, 29 Oct 2021 04:55:30 +0300 Subject: Move the function to computations module Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * The function `batch_computed_tissue_correlation` is a pure computations function with no expressions accessing the database, as far as I can tell, therefore, this commit moves the function over to the gn3.computations.partial_correlations module that holds the pure computation functions. --- gn3/computations/partial_correlations.py | 8 ++++++++ 1 file changed, 8 insertions(+) (limited to 'gn3/computations') diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py index 1fb0ccc..b3de31c 100644 --- a/gn3/computations/partial_correlations.py +++ b/gn3/computations/partial_correlations.py @@ -122,3 +122,11 @@ def find_identical_traits( (primary_name,) + control_names), {}).items() if len(item[1]) > 1), tuple())) + +def batch_computed_tissue_correlation( + trait_value: str, symbol_value_dict: dict, + method: str = "pearson") -> Tuple[dict, dict]: + """ + `web.webqtl.correlation.correlationFunction.batchCalTissueCorr`""" + raise Exception("Not implemented!") + return ({}, {}) -- cgit v1.2.3