From 9d221ad285e4d41e0a83af88bef8f221356848ba Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 3 Apr 2024 13:24:32 +0200
Subject: Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes
 from

---
 gn3/api/rqtl.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gn3/api')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index bd50900..dd9078f 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -46,8 +46,8 @@ run the rqtl_wrapper script and return the results as JSON
 
     rqtl_output = {}
     if not os.path.isfile(os.path.join(current_app.config.get("TMPDIR"),
-                                       "output", rqtl_cmd.get('output_file'))):
-        os.system(__pk__(rqtl_cmd.get('rqtl_cmd')))
+                                       "gn3", rqtl_cmd.get('output_file'))):
+        os.system(rqtl_cmd.get('rqtl_cmd'))
 
     if "pairscan" in rqtl_bool_kwargs:
         rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile)
-- 
cgit 1.4.1