From 716c9e0f1444267bbd99c5fe1cac4729a9643c7e Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Thu, 4 Jan 2024 21:02:55 +0300 Subject: Remove extra gene metadata from query as it's un-necessary. Signed-off-by: Munyoki Kilyungi --- gn3/api/metadata.py | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) (limited to 'gn3/api') diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 11f9f46..b3caa11 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -904,9 +904,8 @@ $prefix CONSTRUCT { ?probeset ?predicate ?object ; - gnt:geneSymbol ?gene ; - dct:references ?probesetResource . - ?gene ?genePred ?geneObj . + dct:references ?probesetResource ; + dct:references ?resource . ?resource rdfs:label ?resourceLabel ; rdfs:comments ?resourceComments . ?probesetResource rdfs:label ?probesetResourceLabel ; @@ -916,11 +915,11 @@ CONSTRUCT { ?probeset rdf:type gnc:Probeset ; rdfs:label "$name" ; ?predicate ?object . + FILTER (!regex(str(?genePred), '(geneSymbol)', 'i')) . OPTIONAL { ?probeset gnt:geneSymbol ?symbolName . ?gene gnt:geneSymbol ?symbolName ; - rdf:type gnc:Gene ; - ?genePred ?geneObj . + rdf:type gnc:Gene . ?resource ^dct:references ?gene ; a ?resourceLink . ?resourceLink rdfs:Class gnc:ResourceLink ; -- cgit v1.2.3