From 32c144cdf41d2f109901d34930296f34fa51323e Mon Sep 17 00:00:00 2001 From: Munyoki Kilyungi Date: Wed, 1 Mar 2023 15:48:15 +0300 Subject: Fetch sampledata * gn3/api/sampledata.py (get_sampledata): New end-point. * gn3/app.py: Register above end-point. * gn3/settings.py: Add new conf variable for LMDB. Signed-off-by: Munyoki Kilyungi --- gn3/api/sampledata.py | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 gn3/api/sampledata.py (limited to 'gn3/api/sampledata.py') diff --git a/gn3/api/sampledata.py b/gn3/api/sampledata.py new file mode 100644 index 0000000..5b09b52 --- /dev/null +++ b/gn3/api/sampledata.py @@ -0,0 +1,23 @@ +"""API for fetching sampledata from a given trait""" +import os +from flask import Blueprint +from flask import jsonify +from flask import current_app + +from gn3.db.matrix import get_current_matrix + + +sampledata = Blueprint("sampledata", __name__) + + +@sampledata.route("/dataset//trait/", methods=["GET"]) +def get_sampledata(dataset_name, trait_name): + """Fetch a trait's sampledata as a matrix.""" + return jsonify( + get_current_matrix( + os.path.join( + current_app.config.get("LMDB_PATH"), + dataset_name, trait_name + ) + ) + ) -- cgit v1.2.3