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AgeCommit message (Expand)Author
2021-03-30initial commit for creating trait and datasetsAlexander Kabui
2021-03-23Convert Path object to a strBonfaceKilz
2021-03-23Use ipfs to get genotype filesBonfaceKilz
2021-03-23Add function to cache ipfs filesBonfaceKilz
2021-03-23Apply autopep-8BonfaceKilz
2021-03-16delete unwanted correlation stuff (#5)Alexander Kabui
2021-03-16Refactor/clean up correlations (#4)Alexander Kabui
2021-03-15Apply pep-8 formattingBonfaceKilz
2021-03-13Correlation api (#2)Alexander Kabui
2021-03-10Add missing "/" in URL in docstringBonfaceKilz
2021-03-10Rename "covariates" to "covars" in endpoints for consistencyBonfaceKilz
2021-03-10Fix k-compute command when "loco" is trueBonfaceKilz
2021-03-10Update test to ensure redis.hset is called correctlyBonfaceKilz
2021-03-10Apply yapf file formatting to fileBonfaceKilz
2021-03-10Add extra tests for file utilsBonfaceKilz
2021-03-10Run yapf-formatter against fileBonfaceKilz
2021-03-08Delete "generate_gemma_computation_cmd"BonfaceKilz
2021-03-08Remove "/k-gwa-computation"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/<token>"BonfaceKilz
2021-03-08Replace "compute_k_values" with "generate_gemma_cmd"BonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
2021-03-08Apply pep-8 formattingBonfaceKilz
2021-03-08Add new endpointBonfaceKilz
2021-03-08Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"BonfaceKilz
2021-03-08bug: Put a space between gemma-wrapper argsBonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"BonfaceKilz
2021-03-08Prepend all endpoints with "api"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/<token>"BonfaceKilz
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Delete "lookup_file" procedureBonfaceKilz
2021-03-08Add test data directoryBonfaceKilz
2021-03-08Update failing tests.BonfaceKilz
2021-03-08Extract files to "/TMPDIR/TOKEN"BonfaceKilz
2021-03-08Fix failing testsBonfaceKilz
2021-03-08Add dummy test data filesBonfaceKilz
2021-03-08Add extra endpoint for checking the status of a commandBonfaceKilz
2021-03-08Make the name of the redis job queue configurableBonfaceKilz
2021-02-24Rename "/gemma/run" to "/gemma/k-gwa-computation"BonfaceKilz
2021-02-24Add tests for "/gemma/run" endpointBonfaceKilz
2021-02-24Create a new helper function for generating k_values and GWABonfaceKilz
2021-02-24Add new procedure that computes the hash of an array of stringsBonfaceKilz
2021-02-24Create a new method for generating a valid phenotype file on the flyBonfaceKilz
2021-02-24Add integration test for "/gemma/version" endpointBonfaceKilz
2021-02-24Update "compose_gemma_cmd" testsBonfaceKilz
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