| Age | Commit message (Expand) | Author |
|---|
| 2021-06-11 | initial commit for queries perfomance tests | Alexander Kabui |
| 2021-06-07 | db: test_db: Add extra variable in test data for "id" | BonfaceKilz |
| 2021-06-07 | Rename json_data column to json_diff_data | BonfaceKilz |
| 2021-06-07 | tests: test_db: Add a test-case for fetchall | BonfaceKilz |
| 2021-06-07 | tests: test_db: Rename TestPhenotype | BonfaceKilz |
| 2021-06-07 | tests: test_phenotype: Rename to test_db | BonfaceKilz |
| 2021-06-03 | Use prepared statements for FETCH sql function | BonfaceKilz |
| 2021-06-03 | Use prepared statements for UPDATE sql function | BonfaceKilz |
| 2021-06-03 | tests: test_audit: Update test case to check for prepared statements | BonfaceKilz |
| 2021-06-03 | Add data structures for the table metadata_audit | BonfaceKilz |
| 2021-06-03 | unit: test_phenotypes: Test for multiple "WHERE" clauses | BonfaceKilz |
| 2021-06-03 | Get the diff between 2 dicts and return that as a dict | BonfaceKilz |
| 2021-05-30 | fix index error (#16) | Alexander Kabui |
| 2021-05-26 | Move the methods, "update" and "fetch", to gn3.db | BonfaceKilz |
| 2021-05-20 | tests: test_phenotype: Add function that tests "fetchone" | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Update failing tests | BonfaceKilz |
| 2021-05-20 | tests: test_phenotypes: New test cases for loading phenotypes | BonfaceKilz |
| 2021-05-18 | Added test for compose_rqtl_cmd in tests/unit/test_commands.py | zsloan |
| 2021-05-18 | Added unit test for computations/rqtl.py | zsloan |
| 2021-05-15 | Merge branch 'main' into feature/minor-fixes | Alexander Kabui |
| 2021-05-15 | index lit tuple result | Alexander Kabui |
| 2021-05-13 | tests: test_general: Add test case for run_r_qtl endpoint | BonfaceKilz |
| 2021-05-13 | Rename file_utils to fs_helpers•••Generally avoid naming things with a "utils" prefix/ suffix since it
encourages contributors to dump any new functions there; and over time, as the
code grows, things get messy...
| BonfaceKilz |
| 2021-05-12 | delete unused functions | Alexander Kabui |
| 2021-05-12 | rename lit_correlation_for_trait_list to lit_correlation_for_trait | Alexander Kabui |
| 2021-05-12 | rename tissue_correlation_for_trait_list with tissue_correlation_for_trait | Alexander Kabui |
| 2021-05-12 | rename p_val ro tissue_p_value for tissue_results | Alexander Kabui |
| 2021-05-10 | tests: test_species: Add test for `get_all_species` | BonfaceKilz |
| 2021-05-10 | tests: test_gemma: Add TMPDIR to test_client() | BonfaceKilz |
| 2021-05-08 | Fix typo | BonfaceKilz |
| 2021-05-08 | tests: test_species: New tests | BonfaceKilz |
| 2021-05-08 | Add extra procedure for parsing a genotype file•••* gn3/computations/parsers.py (parse_genofile): New procedure.
* tests/unit/computations/test_parsers.py: New test files for above.
| BonfaceKilz |
| 2021-05-08 | Add extra genotype test file•••* tests/unit/test_data/genotype.txt: New file.
* tests/unit/test_file_utils.py: Update failing test.
| BonfaceKilz |
| 2021-05-03 | minor fixes for tiss correlation tests and naming | Alexander Kabui |
| 2021-05-03 | replace database with conn | Alexander Kabui |
| 2021-05-02 | delete dataset and trait files | Alexander Kabui |
| 2021-04-18 | refactor:return trait_name in corr_results | Alexander Kabui |
| 2021-04-17 | ad pep8 formatting | Alexander Kabui |
| 2021-04-17 | refactor tests for lit | Alexander Kabui |
| 2021-04-15 | optimization for sample correlation | Alexander Kabui |
| 2021-04-12 | fix tests for lit correlation | Alexander Kabui |
| 2021-04-12 | fix merge conflict | Alexander Kabui |
| 2021-04-12 | Integrate correlation API•••- add new api for gn2-gn3 sample r integration
- delete map for sample list to values
- add db util file
- add python msql-client dependency
- add db for fetching lit correlation results
- add unittests for db utils
- add tests for db_utils
- modify api for fetching lit correlation results
- refactor Mock Database Connector and unittests
- add sql url parser
- add SQL URI env variable
- refactor code for db utils
- modify return data for lit correlation
- refactor tissue correlation endpoint
- replace db_instance with conn | Alexander Kabui |
| 2021-04-06 | add mock db for tests | Alexander Kabui |
| 2021-04-06 | fix Docstrings | Alexander Kabui |
| 2021-04-06 | delete unnecessary functions and comments | Alexander Kabui |
| 2021-04-05 | fix for fetching dataset traits data | Alexander Kabui |
| 2021-04-04 | refactor code for trait data•••modify unittest and integration tests for datasets
| Alexander Kabui |
| 2021-04-03 | add tests for getting trait data | Alexander Kabui |
| 2021-03-31 | add fetch dataset strain id,strain name and unittests | Alexander Kabui |
