genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2021-03-10	Apply yapf file formatting to file	BonfaceKilz

2021-03-10	Add extra tests for file utils	BonfaceKilz
	In test server, files were not extracted properly. This test exposes the bug.
2021-03-10	Run yapf-formatter against file	BonfaceKilz

2021-03-08	Delete "generate_gemma_computation_cmd"	BonfaceKilz

2021-03-08	Replace "compute_k_values" with "generate_gemma_cmd"	BonfaceKilz

2021-03-08	Add generic fn for computing k and gwa values	BonfaceKilz

2021-03-08	Apply pep-8 formatting	BonfaceKilz
	Began using elpy's format code fn
2021-03-08	bug: Put a space between gemma-wrapper args	BonfaceKilz

2021-03-08	Delete "lookup_file" procedure	BonfaceKilz

2021-03-08	Extract files to "/TMPDIR/TOKEN"	BonfaceKilz
	TOKEN is the user token * gn3/file_utils.py (extract_uploaded_file): Add extra param "token". If a token is empty, create a new directory based off that token. * tests/unit/test_file_utils.py: Update failing tests.
2021-03-08	Fix failing tests	BonfaceKilz

2021-03-08	Make the name of the redis job queue configurable	BonfaceKilz

2021-02-24	Create a new helper function for generating k_values and GWA	BonfaceKilz

2021-02-24	Add new procedure that computes the hash of an array of strings	BonfaceKilz

2021-02-24	Create a new method for generating a valid phenotype file on the fly	BonfaceKilz

2021-02-24	Update "compose_gemma_cmd" tests	BonfaceKilz

2021-02-16	Add procedure for uploading gzipped file	BonfaceKilz
	* gn3/file_utils.py (extract_uploaded_file): New procedure. * tests/unit/test_file_utils.py: Test cases for ^^. * tests/unit/upload-data.tar.gz: New test data.
2021-02-16	Add extra option to set email when queueing CMD	BonfaceKilz
	The e-mail field will be used to send the results of the computation when it is completed.
2021-02-16	Add new test cases for run_cmd	BonfaceKilz

2021-02-12	Use sorted list of files when calculating md5sums of directory	BonfaceKilz
	* gn3/file_utils.py (get_dir_hash): Sort list of files before calculating their md5sums. * tests/unit/test_file_utils.py (test_get_dir_hash): Update test-case md5sum.
2021-02-12	Add new procedure for queueing a command	BonfaceKilz
	* gn3/commands.py (queue_cmd): New procedure. * tests/unit/test_commands.py: New test-cases for ^^.
2021-02-12	Add new procedure for composing a gemma cmd	BonfaceKilz
	* gn3/commands.py: New file * tests/unit/test_commands.py: New test-cases for ^^.
2021-02-12	Add new procedure to return a python dict from a json file	BonfaceKilz
	* gn3/file_utils.py (jsonfile_to_dict): New procedure * tests/unit/test_file_utils.py: New test-cases.
2021-02-12	Add new procedure for looking up files in a given ENV variable	BonfaceKilz
	* gn3/file_utils.py (lookup_file): New function. * tests/unit/test_file_utils.py: New test cases for ^^.
2021-02-12	Add function for computing the hash of a directory	BonfaceKilz